G383128


Basic Information

Item Value
gene id G383128
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 7985612 ~ 7986368 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU454229
TGCTTCACAgactttgaatttgaattacTTTTGAGAGTAAACTAACTCCATACCTGCACAGCACCCAGCCTCCTACAGCGCCTCATTAACGCTAACAAACATACAGCACGGAGCTAAccgcacaacacacaccatttaaTTTTCTCAGAGAGGTCTTATGGTGTAATGCAGGCGGCAGGTTCACTCACCGTTCGGTCCATATTTCTCCAAATTGGTTTTGACCTGCTCCGGCGTCAGCCCGTTGTTTTCGTTCACGTCGAAGTGTTTTAAAACTTCGGACGCGGATTTAGTGTGAGCGTTTTCCATTTCTCTTCTTGGAGGGGATGACTTCCTTACGGACAGCCGAAATGCATGTagtttttggtgtgtgtgtgtgtgtgttttttttaaataaataaaaaatatttcaactgAGGTTAAAACCGGTTTTCCACCGAGGTCCGTTCGAGACCGCCAAGCGGAGGTGGGTCGGCGTTGACTTCCACCTGCCCCTTCTGCGAGCCGTTCGCTTTCAAACcgtcctcctctctcctctctcctcctctttccttCGTCGCTTCAAGCTTCAGCTCTTCTCTTACTAGGAAGGTGTGCTTCGGTACCGGGttccgcctctctctctctctctctctctctctctctctctctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU454229 True 649 lncRNA 0.48 3 7985612 7986368

Neighbor

gene id symbol gene type direction distance location
p2rx1 p2rx1 coding upstream 188261 7770898 ~ 7797351 (+)
LOC113531275 NA coding upstream 365280 7617979 ~ 7620332 (+)
sh3glb2b sh3glb2,sh3glb2b,LOC108429737,LOC107748508 coding upstream 382283 7565787 ~ 7603329 (+)
pip5kl1 pip5kl1 coding upstream 421932 7546460 ~ 7563680 (+)
fam102ab fam102a,fam102ab,LOC107681850,LOC107748511,LOC107664417 coding upstream 448642 7487816 ~ 7536970 (+)
LOC113531515 LOC108259923 coding downstream 113479 8099847 ~ 8104105 (+)
spns2 LOC108260118,LOC108429747,LOC107597455,LOC106602867 coding downstream 211111 8197479 ~ 8269630 (+)
ftr82 LOC108260233,LOC108429749,LOC103035912,LOC107664526,LOC107712362,LOC107597500 coding downstream 333569 8319937 ~ 8325759 (+)
ift22 ift22,LOC107597505,LOC107712360,LOC107664522,LOC107677430,LOC107722786 coding downstream 341808 8328176 ~ 8332329 (+)
c2cd2l c2cd2l coding downstream 433446 8419814 ~ 8465196 (+)
G383067 NA non-coding upstream 76386 7905334 ~ 7909226 (+)
G382942 NA non-coding upstream 319924 7662867 ~ 7665688 (+)
G382932 NA non-coding upstream 335539 7649621 ~ 7650073 (+)
G382931 NA non-coding upstream 336089 7649309 ~ 7649523 (+)
G382929 NA non-coding upstream 339141 7646136 ~ 7646471 (+)
G383143 NA non-coding downstream 36625 8022993 ~ 8107472 (+)
G383208 NA non-coding downstream 138275 8124643 ~ 8125748 (+)
G383181 NA non-coding downstream 175732 8162100 ~ 8163700 (+)
G383205 NA non-coding downstream 346089 8332457 ~ 8336304 (+)
G383256 abcg4a,LOC107597525,LOC108261268,LOC108429752 non-coding downstream 366109 8352477 ~ 8355690 (+)
dpm2 dpm2,LOC107664400 other upstream 441498 7538358 ~ 7544114 (+)
LOC113531088 NA other upstream 724522 7260253 ~ 7261090 (+)
LOC113531592 rnf43 other upstream 927413 6962210 ~ 7058199 (+)
ubb ubb,LOC107567755,LOC107588961,LOC107387081 other upstream 1601927 6380662 ~ 6383685 (+)
G381893 NA other upstream 1742915 6223168 ~ 6242697 (+)
spns3 LOC108260438,LOC108260072 other downstream 156215 8142583 ~ 8161257 (+)
G383217 NA other downstream 196023 8182391 ~ 8213107 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other downstream 572458 8558826 ~ 8565257 (+)
gig2o LOC108260416 other downstream 603942 8590310 ~ 8592381 (+)
G383625 LOC108260351 other downstream 778534 8764902 ~ 8775134 (+)

Expression


Co-expression Network