G383208


Basic Information

Item Value
gene id G383208
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 8124643 ~ 8125748 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU454323
TCCTTGAATAACTCGCATGCCTTCCAGGTGACTTTGTAACTACCTCCAATTTTTGTGTATCCTTAAAGCAGCTTTCAGATCCTCCTAGTCGGATTCTCTTACCGAGtcagaacaaaaacattttagatttccaaacattagttttccagcactaaattaaatgttacagaagaatgtttgtatgtcagaaaaaaagcagcatattatgtaagagatcacttttcagccaaaaaacataatgaaggctgctgggttttgctgcaaaaataggaagcaagtgtgacagtcaaattctccagaagaactgtggctggttctgcaagatgctcagtaacacttacagctcatttccttataaaactgcacaaactgtactgCAAAGTGTCgttacaccaaatattgactttgtttcatttattgtgtactactgtttatagtattttttagatgtagaaacatttaatttcattatttttgaaggcatctttgcatgtgcctaagacttctgcacagtactgtatagcTTAAATTTCATGCCCACTGTATAAGTTCATAAGGcgcttattatatatatatatatatattacactacacAAGGTATAGAACCCATTATTTCCCACCTTATAGTACTCTCTTATATTGTGATAGAATATCAAATGTTCACTACTTGTACAACACTGACCAACTTACATgataaatatatcattttcCCTGATAAAAAATTTCTTTTAGACTTAAGGTTTTATTGAAGTCAGTTTTTGTAGGTGACAATACTTCTTTGCTGACACTAAATATAAGGTTCTGTCATTGTATCTTAAATTATATAGAAGAGTAATACCAAGgtaacaatatacagtatatcgtGTTTTATAAAAACTGTCGTGTCGTCATGCGTTTTGCCGTATGAACTAGAATCCATGATGTAAGGCCATGGTTCTCGAACTGTTGTCCTGGTATCcccaggggtccatgaagcatagccacGTTTGATACAATGGTGGAATTaccaacccaccattatcaaattTACACTACGGGGCCAAAAGTAGGTAGACACCTGACTGTCACAtggttgccacaaagttggaagcacacaattgtctaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU454323 True 1106 lncRNA 0.35 1 8124643 8125748

Neighbor

gene id symbol gene type direction distance location
LOC113531515 LOC108259923 coding upstream 20538 8099847 ~ 8104105 (+)
p2rx1 p2rx1 coding upstream 327292 7770898 ~ 7797351 (+)
LOC113531275 NA coding upstream 504311 7617979 ~ 7620332 (+)
sh3glb2b sh3glb2,sh3glb2b,LOC108429737,LOC107748508 coding upstream 521314 7565787 ~ 7603329 (+)
pip5kl1 pip5kl1 coding upstream 560963 7546460 ~ 7563680 (+)
spns2 LOC108260118,LOC108429747,LOC107597455,LOC106602867 coding downstream 71731 8197479 ~ 8269630 (+)
ftr82 LOC108260233,LOC108429749,LOC103035912,LOC107664526,LOC107712362,LOC107597500 coding downstream 194189 8319937 ~ 8325759 (+)
ift22 ift22,LOC107597505,LOC107712360,LOC107664522,LOC107677430,LOC107722786 coding downstream 202428 8328176 ~ 8332329 (+)
c2cd2l c2cd2l coding downstream 294066 8419814 ~ 8465196 (+)
LOC113531377 h2afx,LOC104950138,LOC107677420,LOC106516344,LOC100693699,LOC108260105,LOC106527800 coding downstream 340598 8466346 ~ 8467007 (+)
G383143 NA non-coding upstream 17171 8022993 ~ 8107472 (+)
G383128 NA non-coding upstream 138275 7985612 ~ 7986368 (+)
G383067 NA non-coding upstream 215417 7905334 ~ 7909226 (+)
G382942 NA non-coding upstream 458955 7662867 ~ 7665688 (+)
G382932 NA non-coding upstream 474570 7649621 ~ 7650073 (+)
G383181 NA non-coding downstream 36352 8162100 ~ 8163700 (+)
G383205 NA non-coding downstream 206709 8332457 ~ 8336304 (+)
G383256 abcg4a,LOC107597525,LOC108261268,LOC108429752 non-coding downstream 226729 8352477 ~ 8355690 (+)
G383399 NA non-coding downstream 258497 8384245 ~ 8384503 (+)
G383443 NA non-coding downstream 381468 8507216 ~ 8508382 (+)
dpm2 dpm2,LOC107664400 other upstream 580529 7538358 ~ 7544114 (+)
LOC113531088 NA other upstream 863553 7260253 ~ 7261090 (+)
LOC113531592 rnf43 other upstream 1066444 6962210 ~ 7058199 (+)
ubb ubb,LOC107567755,LOC107588961,LOC107387081 other upstream 1740958 6380662 ~ 6383685 (+)
G381893 NA other upstream 1881946 6223168 ~ 6242697 (+)
spns3 LOC108260438,LOC108260072 other downstream 16835 8142583 ~ 8161257 (+)
G383217 NA other downstream 56643 8182391 ~ 8213107 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other downstream 433078 8558826 ~ 8565257 (+)
gig2o LOC108260416 other downstream 464562 8590310 ~ 8592381 (+)
G383625 LOC108260351 other downstream 639154 8764902 ~ 8775134 (+)

Expression


Co-expression Network