G383217


Basic Information

Item Value
gene id G383217
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 8182391 ~ 8213107 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU454332
aacacacacacacacacacacacaccacacacacacacacgtttccctAAGCTGTGGGTTTTATATTGATCCCCGTGACACATCAAGAGGGATTGCCCCATGCTCGAGTAGGAAGAGAACGAGGGatgggagaggagaggagacgagAGAAGAGAAGGATGAAGGGAGCAGCAGGATGTGTTTCTGTCAGCAGCAGAGCTGTGAGTCCATCGTTTCACAGCACAAAGAGGAACGGGTGAGAAAATGCCTGAGCGCACAACAGAGAGGAAACGTTTCCTTACCGCAGAGCATAGCGTTACATTTACACAGGATATGGAAACGTATGCTCGGCCAAGGAATTCTCATATGCAGTTTGACCTCACTGTGCCTTCTCTTTCTGATTACTCTGAGCTTTGCTTATTTTCCTACACTCCCTTATCCTCTTCCACGATCCACGATTCGTCTCTCCTCCACCACAGTAAATAGGCCGATCAACTCTCTGCCCTATCCCTACCCTACTTCTCTAAAATAGCACGATGGGGGGGTGTGTGGGTTTCGCGGTTCTCTCAGGGGAGCGGCAAAATAGGTCTGTCCTACTCCTACAACGTACTTCTCCCTGTCTGACGACTGCTCGAGAGACACCAGGGTCTACATAGTGACGTGTCAGCCCTAAAATACCTAGCCTTGGGTGTGTGAATAAAACCCCCTTCTTTGTCAGGGAGTGCCGAAGAAGAGAACAGAGTAGCGGTTGTGTTTGCCCAGGCCAAACTGATGACTATGTTTTGGTTTCGGCCCTGGAAAACAAATTGTCATGTCATTTTGGTCAAGACTCCTCAGTGGGGAAAGAATTCAGGCTTCCCGGTTACGAGACTGGTGATATTTCATAACAAAAAGCAAACCGAAAAAGTGCAAGCTATCCTCCCAGCTTCTTTTGCTCCCACTTGGCATAAACTCACAGTACAGTCTCACTTCAGGCTGCTTCATCTAAACAAGGCAGTTTTCAAACCAGATATATAATGGGAATAGGTTCAAAGATGCATCAGCCAAGCATGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU454332 True 1032 TUCP 0.48 2 8182391 8213107

Neighbor

gene id symbol gene type direction distance location
LOC113531515 LOC108259923 coding upstream 78286 8099847 ~ 8104105 (+)
p2rx1 p2rx1 coding upstream 385040 7770898 ~ 7797351 (+)
LOC113531275 NA coding upstream 562059 7617979 ~ 7620332 (+)
sh3glb2b sh3glb2,sh3glb2b,LOC108429737,LOC107748508 coding upstream 579062 7565787 ~ 7603329 (+)
pip5kl1 pip5kl1 coding upstream 618711 7546460 ~ 7563680 (+)
ftr82 LOC108260233,LOC108429749,LOC103035912,LOC107664526,LOC107712362,LOC107597500 coding downstream 106830 8319937 ~ 8325759 (+)
ift22 ift22,LOC107597505,LOC107712360,LOC107664522,LOC107677430,LOC107722786 coding downstream 115069 8328176 ~ 8332329 (+)
c2cd2l c2cd2l coding downstream 206707 8419814 ~ 8465196 (+)
LOC113531377 h2afx,LOC104950138,LOC107677420,LOC106516344,LOC100693699,LOC108260105,LOC106527800 coding downstream 253239 8466346 ~ 8467007 (+)
arcn1a arcn1a,LOC108260335,LOC108429760,LOC107717874,LOC107722780,LOC107677440,LOC105906687 coding downstream 268665 8481772 ~ 8494350 (+)
G383181 NA non-coding upstream 18691 8162100 ~ 8163700 (+)
G383208 NA non-coding upstream 56643 8124643 ~ 8125748 (+)
G383143 NA non-coding upstream 74919 8022993 ~ 8107472 (+)
G383128 NA non-coding upstream 196023 7985612 ~ 7986368 (+)
G383067 NA non-coding upstream 273165 7905334 ~ 7909226 (+)
G383205 NA non-coding downstream 119350 8332457 ~ 8336304 (+)
G383256 abcg4a,LOC107597525,LOC108261268,LOC108429752 non-coding downstream 139370 8352477 ~ 8355690 (+)
G383399 NA non-coding downstream 171138 8384245 ~ 8384503 (+)
G383443 NA non-coding downstream 294109 8507216 ~ 8508382 (+)
G383448 NA non-coding downstream 341489 8554596 ~ 8556843 (+)
spns3 LOC108260438,LOC108260072 other upstream 21134 8142583 ~ 8161257 (+)
dpm2 dpm2,LOC107664400 other upstream 638277 7538358 ~ 7544114 (+)
LOC113531088 NA other upstream 921301 7260253 ~ 7261090 (+)
LOC113531592 rnf43 other upstream 1124192 6962210 ~ 7058199 (+)
ubb ubb,LOC107567755,LOC107588961,LOC107387081 other upstream 1798706 6380662 ~ 6383685 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other downstream 345719 8558826 ~ 8565257 (+)
gig2o LOC108260416 other downstream 377203 8590310 ~ 8592381 (+)
G383625 LOC108260351 other downstream 551795 8764902 ~ 8775134 (+)
G384178 ier5l,LOC108228905 other downstream 1552633 9765740 ~ 9768036 (+)
G384593 NA other downstream 2165106 10378213 ~ 10379665 (+)

Expression


Co-expression Network