G383399


Basic Information

Item Value
gene id G383399
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 8384245 ~ 8384503 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU454533
ACTGACAGGTGCGTGTTGGTTCTCCAACCAGCATGAATCCCGGCCTGCATTCGTGCCGCACCACTGAGCCTACCCACCAGTCATCTCCATTCACCACCCCATTAAAGTCCACATCTGGCACACCACAGTTCACTAGCATGCACCAGGCGAGAGCACGGGATAGAAACATGCAAAGATAAAACAAACGCATTATGAGCCATGAAAATTGTAATGccaaaaattgtaaaaatcaCTCACTCTGACACCCACGGGTATAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU454533 True 259 lncRNA 0.49 1 8384245 8384503

Neighbor

gene id symbol gene type direction distance location
ift22 ift22,LOC107597505,LOC107712360,LOC107664522,LOC107677430,LOC107722786 coding upstream 51916 8328176 ~ 8332329 (+)
ftr82 LOC108260233,LOC108429749,LOC103035912,LOC107664526,LOC107712362,LOC107597500 coding upstream 58486 8319937 ~ 8325759 (+)
spns2 LOC108260118,LOC108429747,LOC107597455,LOC106602867 coding upstream 114615 8197479 ~ 8269630 (+)
LOC113531515 LOC108259923 coding upstream 280140 8099847 ~ 8104105 (+)
p2rx1 p2rx1 coding upstream 586894 7770898 ~ 7797351 (+)
c2cd2l c2cd2l coding downstream 35311 8419814 ~ 8465196 (+)
LOC113531377 h2afx,LOC104950138,LOC107677420,LOC106516344,LOC100693699,LOC108260105,LOC106527800 coding downstream 81843 8466346 ~ 8467007 (+)
arcn1a arcn1a,LOC108260335,LOC108429760,LOC107717874,LOC107722780,LOC107677440,LOC105906687 coding downstream 97269 8481772 ~ 8494350 (+)
phldb1a LOC108260305 coding downstream 111215 8495718 ~ 8550534 (+)
adamts8a LOC108259710,LOC107598150 coding downstream 393771 8778274 ~ 8793835 (+)
G383256 abcg4a,LOC107597525,LOC108261268,LOC108429752 non-coding upstream 28555 8352477 ~ 8355690 (+)
G383205 NA non-coding upstream 47941 8332457 ~ 8336304 (+)
G383181 NA non-coding upstream 220545 8162100 ~ 8163700 (+)
G383208 NA non-coding upstream 258497 8124643 ~ 8125748 (+)
G383143 NA non-coding upstream 276773 8022993 ~ 8107472 (+)
G383443 NA non-coding downstream 122713 8507216 ~ 8508382 (+)
G383448 NA non-coding downstream 170093 8554596 ~ 8556843 (+)
LOC117596219 NA non-coding downstream 229800 8614303 ~ 8615355 (+)
G383609 NA non-coding downstream 353370 8737873 ~ 8738074 (+)
LOC113531289 NA non-coding downstream 566289 8950792 ~ 8953176 (+)
G383217 NA other upstream 171138 8182391 ~ 8213107 (+)
spns3 LOC108260438,LOC108260072 other upstream 222988 8142583 ~ 8161257 (+)
dpm2 dpm2,LOC107664400 other upstream 840131 7538358 ~ 7544114 (+)
LOC113531088 NA other upstream 1123155 7260253 ~ 7261090 (+)
LOC113531592 rnf43 other upstream 1326046 6962210 ~ 7058199 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other downstream 174323 8558826 ~ 8565257 (+)
gig2o LOC108260416 other downstream 205807 8590310 ~ 8592381 (+)
G383625 LOC108260351 other downstream 380399 8764902 ~ 8775134 (+)
G384178 ier5l,LOC108228905 other downstream 1381237 9765740 ~ 9768036 (+)
G384593 NA other downstream 1993710 10378213 ~ 10379665 (+)

Expression


Co-expression Network