G383448


Basic Information

Item Value
gene id G383448
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 8554596 ~ 8556843 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU454598
CACAGACAACAATGAATTCCGAGGGATACGGTGATGAAATTGTGATGTAACCGCTACTAACATGTGCCATACATGAAGTTAGCGTGCTGCGTGCTGCTGCGCCGCGCGCGCGCGCCCTCACCCCGTCTTCACTTCCGCGTTGCGCGGCCGGAGAGTAAGTAACCAACAGAATGAATCAGCAATCAGGTGTACACAGAacggaaaaacaaacaaacaaaccctaGATTAAAGAGCTCCAAGTGGGCTCTTGGCGGCGATTAGCCTTTCAGTTGGACTGTTTATGGCTCGTATAGCTATGAAAAGGGATTGTGTTCACGTTAGTGCATGCTCCTAGATCCCAAAGCCCATATGCGTAATAAGTGTAAGctttagacagagagagagaaagagaaagatagagagatcCCAAGATCTAAAGGGCGCGATTAATTCGCACTGTCTAATTAATCAGCTGTGAAGTGTAGCAGGCCTACAGGCGCTGTACCACCGTGCATACATGTGCAGCATCAGCTATTGTTTCACTAGAttGGCGCCCCGGCGGACCAATTAACGCGCGGCGAGATGGGAGAGTCAGCGCTTTCCTGGGAGAAGATCCCCGCACTTCAACAACCATTATTATCTCACTCCCGACCACGTTACGACCGCACTCGCGAAGATTGCATCAggtctgcttttcttttttacatctCCGAGGCCGAAGAAGCGACTTGCGAGAGGAATTACTGTATCACAGTATCTTCACAAGCGCGCCGCTTTGATCGTGGAGACGGCGCGATGGAGAGAGAGCATGCTCATCCTGCCACCAGCAATCAGGTGTACACAGAAGCACCTTCTCATCAAGCCTGAACGACCACCTGCTGCTGATGTCACAACAGCCTTAAACCTGCTTCTATAAGTTCATTCTGTTGGTTACTTAGTTAGGCTTatactcttaaaaataaaggcaCCAAACTATAGGGTTCCTTGTTGCTTTGGTGGTACCATCAAGACTGGACctttattatgtgtttttatacctttaaaagtaatttaaggtacataattggaccttaaggaccactggATGCACCTTTTGAACCTTAGCTATttaaaggtacaccacatgcaccttcccagaCTTCCCAAACAAACATACTAAAGGAACAAAAGATGCACCCTAGATAGTACCAGCCCACTGACAATAAAAGTACAGCCTGATACCCTTATTTCTGATGGTTCctagttcaatcctgagcttgggttactgtctgcatCTGCATGTCCCGAGTTacacatgttctccttgtgattgcatgggtttcctcagtGTTCTTTAGTTTCCTCCTACGGTCCAAAACATGCAGATTTgcagattggctatgctaaagtgcctcttggtgtgaatgagtgtgtgaatgtgtgtgcgcacggtgccctgtgatgtacCTCCATCTCATCCGGGGTGAGTTGCCCTGCCTTGCGCCcaaccctgacaaggataaagcagttgcAGGTACCTGAATGAATggatttctgagagtgtagtgTGGCCAGACACGGCATAATTCATAGGACAGTTCTGTAATAGAGCTTTGTTTTATGCATCCCAAAATTATCCTCAAATATTGTTCAGCAGGCTAGACAGGTTCCCAACTAATCAGATCTGAGTTTcccaaaaatatcacaatacaaaGAGCATCATTAAATGGTAGAGTGAGCATCACATCGAGCACTTTCTCTACCAGTTAAGATGATCTTAACTTTGTGATGCTTTTGCGAAAGTCAGCTCAGCTCAttaaaaacacttcatgattcgagcagagaaaacattaaaaattgcCAGACAGGGGGTAGTCCAGGATGAAGGGTGTGTTTGTTCTGTACACTGGTACACGtaaaacacatgtacacactaaAGTATAGGCCCTACAGCATCACCAATCAGATTATTGCTTTGAAACATGGGAAACTGggtaatgcataaaatctggTGCAAGTCTTAGAAAGTTTTACAGAGACAAAATATTTGTAGGTAAGAGACTTTTTGTGTTTCATTAACTGTTTGATGCTTTTTGTTGGCACCTTTGGTATGCTTATGTGAGACTTTTCAAACTTAAATAATAACATCTGTTAAATGGAC

Function

GO:

id name namespace
GO:0034587 piRNA metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU454598 True 2119 lncRNA 0.45 2 8554596 8556843

Neighbor

gene id symbol gene type direction distance location
phldb1a LOC108260305 coding upstream 4062 8495718 ~ 8550534 (+)
arcn1a arcn1a,LOC108260335,LOC108429760,LOC107717874,LOC107722780,LOC107677440,LOC105906687 coding upstream 60246 8481772 ~ 8494350 (+)
LOC113531377 h2afx,LOC104950138,LOC107677420,LOC106516344,LOC100693699,LOC108260105,LOC106527800 coding upstream 87589 8466346 ~ 8467007 (+)
c2cd2l c2cd2l coding upstream 89400 8419814 ~ 8465196 (+)
ift22 ift22,LOC107597505,LOC107712360,LOC107664522,LOC107677430,LOC107722786 coding upstream 222267 8328176 ~ 8332329 (+)
adamts8a LOC108259710,LOC107598150 coding downstream 221431 8778274 ~ 8793835 (+)
zbtb44 zbtb44,LOC107717865,LOC107597664,LOC107722796,LOC107587334 coding downstream 237241 8794084 ~ 8808883 (+)
LOC113531529 bco2,LOC108260375 coding downstream 284654 8841497 ~ 8866506 (+)
LOC113531654 bco2,LOC108260375 coding downstream 311454 8868297 ~ 8885127 (+)
tbcelb tbcelb,LOC108260315,LOC108431019,LOC107665031,LOC107595495,LOC107740816 coding downstream 575046 9131889 ~ 9154326 (+)
G383443 NA non-coding upstream 46214 8507216 ~ 8508382 (+)
G383399 NA non-coding upstream 170093 8384245 ~ 8384503 (+)
G383256 abcg4a,LOC107597525,LOC108261268,LOC108429752 non-coding upstream 198906 8352477 ~ 8355690 (+)
G383205 NA non-coding upstream 218292 8332457 ~ 8336304 (+)
G383181 NA non-coding upstream 390896 8162100 ~ 8163700 (+)
LOC117596219 NA non-coding downstream 57460 8614303 ~ 8615355 (+)
G383609 NA non-coding downstream 181030 8737873 ~ 8738074 (+)
LOC113531289 NA non-coding downstream 393949 8950792 ~ 8953176 (+)
LOC113531287 NA non-coding downstream 397304 8954147 ~ 8964359 (+)
G383849 NA non-coding downstream 567580 9124423 ~ 9124758 (+)
G383217 NA other upstream 341489 8182391 ~ 8213107 (+)
spns3 LOC108260438,LOC108260072 other upstream 393339 8142583 ~ 8161257 (+)
dpm2 dpm2,LOC107664400 other upstream 1010482 7538358 ~ 7544114 (+)
LOC113531088 NA other upstream 1293506 7260253 ~ 7261090 (+)
LOC113531592 rnf43 other upstream 1496397 6962210 ~ 7058199 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other downstream 1983 8558826 ~ 8565257 (+)
gig2o LOC108260416 other downstream 33467 8590310 ~ 8592381 (+)
G383625 LOC108260351 other downstream 208059 8764902 ~ 8775134 (+)
G384178 ier5l,LOC108228905 other downstream 1208897 9765740 ~ 9768036 (+)
G384593 NA other downstream 1821370 10378213 ~ 10379665 (+)

Expression


Co-expression Network