gig2o (LOC108260416)


Basic Information

Item Value
gene id gig2o
gene name LOC108260416
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 8590310 ~ 8592381 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU454617
CACTAAACTGAAAGCAAATAACAAGGGCGTCGAGAAAACAAGGAAGAACAGAGCTCATGGACGGCGCTGTGAGTTTTGCAGGCTGGCGCGCTGTAGAAGACAGCAAGACACTTTCAGAGGATGAAGAGCCGAAATCGGGCCGTGTGTACACCATGTACCATGGCACACACATCGACAACGCTGAAGACATCATCGTCAACGGCTTCAAGCCGTCCACACGCGGAATGCTGGGGAAAGGCGTGTACGTGAGCCGCAATATCAAGAAGGCCCGGTGCTACCCGCTCCGAACCGACAAGCGCGACCAGGTCGTGTTCAAGCTCAAGGTCAGCGTCggcaaagtgaaaaaaatcgACTGCGACAACCATCCACTGCGCGCGACCTGGCACGACGACGGCTACGACTGCGCCTGGGTGCCTCCACGCAGCAATATCTCTGCGATCAAATCCGGACGAGAGGAGGACTGCGTGTGGGACCCGACACGCATCACTGTGGTCGACGTGGCGTGTTGCGTGGATGAGGGGAAACGACGCAAGCTGCGTAATCTCATCCGCAGCCACGTGCGCAGCGACGAGTACCCCTCATGCCGCCAGAGCTCTCCGGACTTACCGCACGACGTGCGGGACTGCTGGGCATGCGGGAGCAGGATTTGTCCGTTTGAAAAAGAGCATGTGTGTATGACGCAG
>XM_026922081.2
GTGTTCAGGTATTTCCTGGTTGGCATTGCGCTTACACTAAACTGAAAGCAAATAACAAGGGCGTCGAGAAAACAAGGAAGAACAGAGCTCATGGACGGCGCTGTGAGTTTTGCAGGCTGGCGCGCTGTAGAAGACAGCAAGACACTTTCAGAGGATGAAGAGCCGAAATCGGGCCGTGTGTACACCATGTACCATGGCACACACATCGACAACGCTGAAGACATCATCGTCAACGGCTTCAAGCCGTCCACACGCGGAATGCTGGGGAAAGGCGTGTACGTGAGCCGCAATATCAAGAAGGCCCGGTGCTACCCGCTCCGAACCGACAAGCGCGACCAGGTCGTGTTCAAGCTCAAGGTCAGCGTCggcaaagtgaaaaaaatcgACTGCGACAACCATCCACTGCGCGCGACCTGGCACGACGACGGCTACGACTGCGCCTGGGTGCCTCCACGCAGCAATATCTCTGCGATCAAATCCGGACGAGAGGAGGACTGCGTGTGGGACCCGACACGCATCACTGTGGTCGACGTGGCGTGTTGCGTGGATGAGGGGAAACGACGCAAGCTGCGTAATCTCATCCGCAGCCACGTGCGCAGCGACGAGTACCCCTCATGCCGCCAGAGCTCTCCGGACTTACCGCACGACGTGCGGGACTGCTGGGCATGCGGGAGCAGGATTTGTCCGTTTGAAAAAGAGCATGTGTGTATGACGCAGTAACATATCCGGTGAAAGTTCCCTACATCCGGTCCTGGAGGTCCAGCACAGTGAGGTATGCTGAACTGAGGGCCTCCCAGGGCTGGATCTGGGGAACTCTGCactgtcagtaaaaaaaaaaaaaaaaaaagtactaccTTTCCTTGTCGCTTAGGTGGTTCTCTCAAGATTACACTAAAAGTTTTACATTAAAacctatttatccatttatgtaccataaatacttttaaatatacactatatccaTGTTCCCATGTGACAGAGACATattcacagtaaaaaaaaaaaaaagatatatccTAAGGTCCTGTATCATAGATAAGGAAAGGTAGAGTttaacagcctttttttttttttttctgagaatgtgGGTAGTCAGTCACTGTGGCCTATGCAGCTCAGACAGTTACGGCTGTTTACATGTCAGACTCAGCTGATAAAAAACATGAAGAGTTCTTCTGTGACACACcatttatacataatatattttctATACAATAGGGTAGAATTTTCTTTGTCTGTGGTGGTCAGTGTCTTTTTACCTTTGAAAGTTTCTCTTATTCGTCTTATatctatgttttatttatgttgttaTAATTAATGAGATGACTAATCACTGTGTTAACTAACCTAATTAAAACATAACCTATAGCCTAGAGATGTAGAGGTGTGCATAAGGACCAGAATCCCACAATATGCAACAAAAATTCACTCAAGTGGAAGAGTTTTGCTTTCATACTTTCGTACTTGCTAAGATCATGGTACAAAGATTTATGAATAGGAGACACACAGTTCTTTTTTGTCTATCATCAGTGGTTTGCTCCAGTAGCCCGACCTAAATACTGGCTTTGTCACATATTTTTACCATATTTTTGTACAAACTGGCCCgaaatgcacaaaataaatatgcttttatttactgtaaagtgCCTGGTCCATAGCGCAGTATGCACAGGGCAGCATATCTCTGCTGGGTGTCCAaaaatacttatttaattaatttgaaaaatattagcATGTATGTtaattgtgtatgtttttgatTGTTCTTATTTGAACATTCTCtgttgttattaaaagaaaatattcccGGAAAATCTTACAGACGTTATACTGAAATGCAGGACCCTGTTTAGACGAGCAGCAGCATTGCGCCCCAGCTTCATATTAgaatctttctggaatgtaataaacccaaaaactgaagtaaatctgataaaatatta
>XM_026922082.2
GGCCAGGGCTAGCAGTGAGCAAGGTGTTCAGGTATTTCCTGGTTGGCATTGCGCTTACACTAAACTGAAAGCAAATAACAAGGGCGTCGAGAAAACAAGGAAGAAAGCTCATGGACGGCGCTGTGAGTTTTGCAGGCTGGCGCGCTGTAGAAGACAGCAAGACACTTTCAGAGGATGAAGAGCCGAAATCGGGCCGTGTGTACACCATGTACCATGGCACACACATCGACAACGCTGAAGACATCATCGTCAACGGCTTCAAGCCGTCCACACGCGGAATGCTGGGGAAAGGCGTGTACGTGAGCCGCAATATCAAGAAGGCCCGGTGCTACCCGCTCCGAACCGACAAGCGCGACCAGGTCGTGTTCAAGCTCAAGGTCAGCGTCggcaaagtgaaaaaaatcgACTGCGACAACCATCCACTGCGCGCGACCTGGCACGACGACGGCTACGACTGCGCCTGGGTGCCTCCACGCAGCAATATCTCTGCGATCAAATCCGGACGAGAGGAGGACTGCGTGTGGGACCCGACACGCATCACTGTGGTCGACGTGGCGTGTTGCGTGGATGAGGGGAAACGACGCAAGCTGCGTAATCTCATCCGCAGCCACGTGCGCAGCGACGAGTACCCCTCATGCCGCCAGAGCTCTCCGGACTTACCGCACGACGTGCGGGACTGCTGGGCATGCGGGAGCAGGATTTGTCCGTTTGAAAAAGAGCATGTGTGTATGACGCAGTAACATATCCGGTGAAAGTTCCCTACATCCGGTCCTGGAGGTCCAGCACAGTGAGGTATGCTGAACTGAGGGCCTCCCAGGGCTGGATCTGGGGAACTCTGCactgtcagtaaaaaaaaaaaaaaaaaaagtactaccTTTCCTTGTCGCTTAGGTGGTTCTCTCAAGATTACACTAAAAGTTTTACATTAAAacctatttatccatttatgtaccataaatacttttaaatatacactatatccaTGTTCCCATGTGACAGAGACATattcacagtaaaaaaaaaaaaaagatatatccTAAGGTCCTGTATCATAGATAAGGAAAGGTAGAGTttaacagcctttttttttttttttctgagaatgtgGGTAGTCAGTCACTGTGGCCTATGCAGCTCAGACAGTTACGGCTGTTTACATGTCAGACTCAGCTGATAAAAAACATGAAGAGTTCTTCTGTGACACACcatttatacataatatattttctATACAATAGGGTAGAATTTTCTTTGTCTGTGGTGGTCAGTGTCTTTTTACCTTTGAAAGTTTCTCTTATTCGTCTTATatctatgttttatttatgttgttaTAATTAATGAGATGACTAATCACTGTGTTAACTAACCTAATTAAAACATAACCTATAGCCTAGAGATGTAGAGGTGTGCATAAGGACCAGAATCCCACAATATGCAACAAAAATTCACTCAAGTGGAAGAGTTTTGCTTTCATACTTTCGTACTTGCTAAGATCATGGTACAAAGATTTATGAATAGGAGACACACAGTTCTTTTTTGTCTATCATCAGTGGTTTGCTCCAGTAGCCCGACCTAAATACTGGCTTTGTCACATATTTTTACCATATTTTTGTACAAACTGGCCCgaaatgcacaaaataaatatgcttttatttactgtaaagtgCCTGGTCCATAGCGCAGTATGCACAGGGCAGCATATCTCTGCTGGGTGTCCAaaaatacttatttaattaatttgaaaaatattagcATGTATGTtaattgtgtatgtttttgatTGTTCTTATTTGAACATTCTCtgttgttattaaaagaaaatattcccGGAAAATCTTACAGACGTTATACTGAAATGCAGGACCCTGTTTAGACGAGCAGCAGCATTGCGCCCCAGCTTCATATTAgaatctttctggaatgtaataaacccaaaaactgaagtaaatctgataaaatatta

Function

NR:

description
PREDICTED: uncharacterized protein LOC107597653

GO:

id name namespace
GO:0003950 NAD+ ADP-ribosyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU454617 False 683 TUCP 0.58 2 8590367 8591155
XM_026922081.2 False 1943 mRNA 0.43 2 8590333 8592381
XM_026922082.2 True 1963 mRNA 0.43 2 8590310 8592381

Neighbor

gene id symbol gene type direction distance location
phldb1a LOC108260305 coding upstream 39776 8495718 ~ 8550534 (+)
arcn1a arcn1a,LOC108260335,LOC108429760,LOC107717874,LOC107722780,LOC107677440,LOC105906687 coding upstream 95960 8481772 ~ 8494350 (+)
LOC113531377 h2afx,LOC104950138,LOC107677420,LOC106516344,LOC100693699,LOC108260105,LOC106527800 coding upstream 123303 8466346 ~ 8467007 (+)
c2cd2l c2cd2l coding upstream 125114 8419814 ~ 8465196 (+)
ift22 ift22,LOC107597505,LOC107712360,LOC107664522,LOC107677430,LOC107722786 coding upstream 257981 8328176 ~ 8332329 (+)
adamts8a LOC108259710,LOC107598150 coding downstream 185893 8778274 ~ 8793835 (+)
zbtb44 zbtb44,LOC107717865,LOC107597664,LOC107722796,LOC107587334 coding downstream 201703 8794084 ~ 8808883 (+)
LOC113531529 bco2,LOC108260375 coding downstream 249116 8841497 ~ 8866506 (+)
LOC113531654 bco2,LOC108260375 coding downstream 275916 8868297 ~ 8885127 (+)
tbcelb tbcelb,LOC108260315,LOC108431019,LOC107665031,LOC107595495,LOC107740816 coding downstream 539508 9131889 ~ 9154326 (+)
G383448 NA non-coding upstream 33467 8554596 ~ 8556843 (+)
G383443 NA non-coding upstream 81928 8507216 ~ 8508382 (+)
G383399 NA non-coding upstream 205807 8384245 ~ 8384503 (+)
G383256 abcg4a,LOC107597525,LOC108261268,LOC108429752 non-coding upstream 234620 8352477 ~ 8355690 (+)
G383205 NA non-coding upstream 254006 8332457 ~ 8336304 (+)
LOC117596219 NA non-coding downstream 21922 8614303 ~ 8615355 (+)
G383609 NA non-coding downstream 145492 8737873 ~ 8738074 (+)
LOC113531289 NA non-coding downstream 358411 8950792 ~ 8953176 (+)
LOC113531287 NA non-coding downstream 361766 8954147 ~ 8964359 (+)
G383849 NA non-coding downstream 532042 9124423 ~ 9124758 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other upstream 25053 8558826 ~ 8565257 (+)
G383217 NA other upstream 377203 8182391 ~ 8213107 (+)
spns3 LOC108260438,LOC108260072 other upstream 429053 8142583 ~ 8161257 (+)
dpm2 dpm2,LOC107664400 other upstream 1046196 7538358 ~ 7544114 (+)
LOC113531088 NA other upstream 1329220 7260253 ~ 7261090 (+)
G383625 LOC108260351 other downstream 172521 8764902 ~ 8775134 (+)
G384178 ier5l,LOC108228905 other downstream 1173359 9765740 ~ 9768036 (+)
G384593 NA other downstream 1785832 10378213 ~ 10379665 (+)
ajm1 c28h9orf172 other downstream 2705593 11297974 ~ 11326055 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other downstream 3125637 11718018 ~ 11835044 (+)

Expression


Co-expression Network