G383911


Basic Information

Item Value
gene id G383911
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 9192465 ~ 9192780 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU455128
aagtgtgatctctgtgactttaactgtggcatggttgttggtgccagatgggctggtttgagtatttcagaaactgctgatctcctgggaatttcacacacaacggtctctagagtttacacagaatgatgtgaaaaacagcTGTGTGCtaagggtctgcaggctgaaacaatttgttgatgagagagatcagacgAGAATCAACAGACTGGCctgagctaacaggaagtctatagtaactcaaataagcactctgtATAATCATGGTGAGCAGATAAGCATCTCAGAATCTGGCATACATCtcacaccaacaacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU455128 True 316 lncRNA 0.43 1 9192465 9192780

Neighbor

gene id symbol gene type direction distance location
tecta tecta,LOC107665015,LOC106603728 coding upstream 7183 9159028 ~ 9185282 (+)
tbcelb tbcelb,LOC108260315,LOC108431019,LOC107665031,LOC107595495,LOC107740816 coding upstream 38139 9131889 ~ 9154326 (+)
LOC113531654 bco2,LOC108260375 coding upstream 307338 8868297 ~ 8885127 (+)
LOC113531529 bco2,LOC108260375 coding upstream 325959 8841497 ~ 8866506 (+)
zbtb44 zbtb44,LOC107717865,LOC107597664,LOC107722796,LOC107587334 coding upstream 383582 8794084 ~ 8808883 (+)
tlcd3a LOC108260074,LOC108431021,LOC106929083,LOC103476334 coding downstream 63104 9255884 ~ 9283778 (+)
c27h9orf78 c28h9orf78,cunh9orf78,zgc:103692,LOC107587408,LOC107726294,LOC103362310,LOC107710755 coding downstream 158760 9351540 ~ 9358888 (+)
rpl7a rpl7a coding downstream 175564 9368344 ~ 9372072 (+)
LOC113531685 NA coding downstream 175709 9368489 ~ 9368564 (+)
LOC113531686 NA coding downstream 176051 9368831 ~ 9368903 (+)
G383849 NA non-coding upstream 67707 9124423 ~ 9124758 (+)
LOC113531287 NA non-coding upstream 228106 8954147 ~ 8964359 (+)
LOC113531289 NA non-coding upstream 239289 8950792 ~ 8953176 (+)
G383609 NA non-coding upstream 454391 8737873 ~ 8738074 (+)
LOC117596219 NA non-coding upstream 577110 8614303 ~ 8615355 (+)
G383947 NA non-coding downstream 119585 9312365 ~ 9314081 (+)
G383951 NA non-coding downstream 127891 9320671 ~ 9323752 (+)
G383953 NA non-coding downstream 137849 9330629 ~ 9331254 (+)
G383954 NA non-coding downstream 138482 9331262 ~ 9331555 (+)
G383958 NA non-coding downstream 140897 9333677 ~ 9334230 (+)
G383625 LOC108260351 other upstream 417331 8764902 ~ 8775134 (+)
gig2o LOC108260416 other upstream 600084 8590310 ~ 8592381 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other upstream 627208 8558826 ~ 8565257 (+)
G383217 NA other upstream 979358 8182391 ~ 8213107 (+)
spns3 LOC108260438,LOC108260072 other upstream 1031208 8142583 ~ 8161257 (+)
G384178 ier5l,LOC108228905 other downstream 572960 9765740 ~ 9768036 (+)
G384593 NA other downstream 1185433 10378213 ~ 10379665 (+)
ajm1 c28h9orf172 other downstream 2105194 11297974 ~ 11326055 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other downstream 2525238 11718018 ~ 11835044 (+)
zgc:63972 LOC108260458 other downstream 3598121 12790901 ~ 12800917 (+)

Expression


Co-expression Network