G383959


Basic Information

Item Value
gene id G383959
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 9335258 ~ 9335621 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU455184
AGGGTTTCTTCTAAATAAATGCAAGTAGACAGATACATGGAAATGtgaattttctctgtttttcataCCTGCGTATCGACTCCATAATGTAGGTGAGCCAGCCCTGGGCAGCATAGgtgtctgcacacacacccatcttGGCTGGGGTGCTCTGGTGAATGGAGGAGTGGAGTTTAGCCAGATCTTCTTTACCCGGAATTGGCAGAGACAAATCCTGAAAGGTCTCGACTGTTGTTGACACCTAGAGAAGTCGAAAAAGCATTGTTGCTACATGTAATTTTACTAGTGTATAATTAatacatgtattttaattaaaaatcttttacaaTTAGAGGTCTCGGAGGACTGATGCCCTAGTTTGTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU455184 True 364 lncRNA 0.41 1 9335258 9335621

Neighbor

gene id symbol gene type direction distance location
tlcd3a LOC108260074,LOC108431021,LOC106929083,LOC103476334 coding upstream 51480 9255884 ~ 9283778 (+)
usp2b usp2b,usp2,LOC108260071,LOC108431020,LOC107665042,LOC107740817,LOC107731051 coding upstream 102616 9186660 ~ 9232642 (+)
tecta tecta,LOC107665015,LOC106603728 coding upstream 149976 9159028 ~ 9185282 (+)
tbcelb tbcelb,LOC108260315,LOC108431019,LOC107665031,LOC107595495,LOC107740816 coding upstream 180932 9131889 ~ 9154326 (+)
LOC113531654 bco2,LOC108260375 coding upstream 450131 8868297 ~ 8885127 (+)
c27h9orf78 c28h9orf78,cunh9orf78,zgc:103692,LOC107587408,LOC107726294,LOC103362310,LOC107710755 coding downstream 15919 9351540 ~ 9358888 (+)
rpl7a rpl7a coding downstream 32723 9368344 ~ 9372072 (+)
LOC113531685 NA coding downstream 32868 9368489 ~ 9368564 (+)
LOC113531686 NA coding downstream 33210 9368831 ~ 9368903 (+)
LOC113531687 NA coding downstream 33640 9369261 ~ 9369328 (+)
G383958 NA non-coding upstream 1028 9333677 ~ 9334230 (+)
G383954 NA non-coding upstream 3703 9331262 ~ 9331555 (+)
G383953 NA non-coding upstream 4004 9330629 ~ 9331254 (+)
G383951 NA non-coding upstream 11506 9320671 ~ 9323752 (+)
G383947 NA non-coding upstream 21177 9312365 ~ 9314081 (+)
G383960 usp20 non-coding downstream 1289 9336910 ~ 9337906 (+)
G383961 NA non-coding downstream 3312 9338933 ~ 9339146 (+)
G383965 NA non-coding downstream 6807 9342428 ~ 9342645 (+)
G383971 NA non-coding downstream 36545 9372166 ~ 9454589 (+)
LOC117596253 NA non-coding downstream 118424 9454045 ~ 9456252 (+)
G383625 LOC108260351 other upstream 560124 8764902 ~ 8775134 (+)
gig2o LOC108260416 other upstream 742877 8590310 ~ 8592381 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other upstream 770001 8558826 ~ 8565257 (+)
G383217 NA other upstream 1122151 8182391 ~ 8213107 (+)
spns3 LOC108260438,LOC108260072 other upstream 1174001 8142583 ~ 8161257 (+)
G384178 ier5l,LOC108228905 other downstream 430119 9765740 ~ 9768036 (+)
G384593 NA other downstream 1042592 10378213 ~ 10379665 (+)
ajm1 c28h9orf172 other downstream 1962353 11297974 ~ 11326055 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other downstream 2382397 11718018 ~ 11835044 (+)
zgc:63972 LOC108260458 other downstream 3455280 12790901 ~ 12800917 (+)

Expression


Co-expression Network