G383960 (usp20)


Basic Information

Item Value
gene id G383960
gene name usp20
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 9336910 ~ 9337906 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU455185
CCTGAGCTCTGCCGGTCCCCATCTGCTCTCCAACTCTTTCGTTCTGCTCCTCCTGCACTGCCGTGTCCACATCAGCGTCCTCGTCCATCTCCGGcgttctctcctctcctctgtcctCCCGCCGTCTCTCCTTCAGCTTCTCCTTCTCAGAGATCCCACTACTCTCCCTCGTTCCTGTGCACTCGTCCTGAATAAGAAGCTCCGTCTCACCTCCTGCTCTATCTCCATCACCTCTCTCGCTCCCTGAACCCGAGTCACATGACAGGAAGTCATCCTCCGAGGGGCTACGGTCTCCGCCAGCATGGTCTTGGTTGTCGTGATTGCTCTCCGAGTCATTTTCAGTGATGGAGTTGCTGTAGTCAATGACAGGCTCCTTCAGTTCCTCATGCAGCTGATCCATCAGACAGCGCAGGAACTCCTGAGTG
>TU455186
CCTGAGCTCTGCCGGTCCCCATCTGCTCTCCAACTCTTTCGTTCTGCTCCTCCTGCACTGCCGTGTCCACATCAGCGTCCTCGTCCATCTCCGGcgttctctcctctcctctgtcctCCCGCCGTCTCTCCTTCAGCTTCTCCTTCTCAGAGATCCCACTACTCTCCCTCGTTCCTGTGCACTCGTCCTGAATAAGAAGCTCCGTCTCACCTCCTGCTCTATCTCCATCACCTCTCTCGCTCCCTGAACCCGAGTCACATGACAGGAAGTCATCCTCCGAGGGGCTACGGTCTCCGCCAGCATGGTCTTGGTTGTCGTGATTGCTCTCCGAGTCATTTTCAGTGATGGAGTTGCTGTAGTCAATGACAGGCTCCTTCAGTTCCTCATGCAGCTGATCCATCAGACAGCGCAGGAACTCCTGAGTGTCCTGAAGGGCACAGAGCTGACAAAGCTAAGTTTGAACTGTTTGCACAATACcgaaacacttttttttgcatcatatgAGCACTGCATCTTATAATATTGGCTGCTATACACTGGACTGTTTTTCACATATTGCAGGAGTTGATAAATCAGAAATTCAGCAGCTAGCCCACCAGTAATGTGAAACCAAATTGACTAGACAAGTTAGCTAGTGAAGGGCATTAATACGGACTACAAAAAATTAACAAGTTTGTGATCCTCATCCTCTTCGAATAAAGTTTCGAGCACAATGAATTTTTGTTCTTGACCAAAATTTTTGTCGTTAGACCAACGTTTCAGGTTAGAGATGTGGTGTTCTATCCTTGTATCACACGTAAAAGATAGTTTGAGTCTGGTTAGCATTCTTATTTTTTCTCAAGATGTTTTCCCATGAGGTGACACTTAGTTATAGTAGGAGA
>TU455188
tgcacacattatttaaatgtgattaattttaataaattttttatttacacgATGTAGTAAAAAGTACGCagtattatatactgtatatagtcaGTTTTTGTGTGTACCTGTATTTCCCTGAGCTCTGCCGGTCCCCATCTGCTCTCCAACTCTTTCGTTCTGCTCCTCCTGCACTGCCGTGTCCACATCAGCGTCCTCGTCCATCTCCGGcgttctctcctctcctctgtcctCCCGCCGTCTCTCCTTCAGCTTCTCCTTCTCAGAGATCCCACTACTCTCCCTCGTTCCTGTGCACTCGTCCTGAATAAGAAGCTCCGTCTCACCTCCTGCTCTATCTCCATCACCTCTCTCGCTCCCTGAACCCGAGTCACATGACAGGAAGTCATCCTCCGAGGGGCTACGGTCTCCGCCAGCATGGTCTTGGTTGTCGTGATTGCTCTCCGAGTCATTTTCAGTGATGGAGTTGCTGTAGTCAATGACAGGCTCCTTCAGTTCCTCATGCAGCTGATCCATCAGACAGCGCAGGAACTCCTGAGTG

Function

symbol description
usp20 Predicted to enable cysteine-type endopeptidase activity and thiol-dependent deubiquitinase. Acts upstream of or within central nervous system morphogenesis and cranial skeletal system development. Predicted to be located in centrosome. Predicted to be active in cytoplasm. Is expressed in central nervous system and yolk syncytial layer. Orthologous to human USP20 (ubiquitin specific peptidase 20).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU455185 False 425 lncRNA 0.56 1 9337026 9337450
TU455186 True 881 lncRNA 0.46 1 9337026 9337906
TU455188 False 541 lncRNA 0.50 1 9336910 9337450

Neighbor

gene id symbol gene type direction distance location
tlcd3a LOC108260074,LOC108431021,LOC106929083,LOC103476334 coding upstream 53132 9255884 ~ 9283778 (+)
usp2b usp2b,usp2,LOC108260071,LOC108431020,LOC107665042,LOC107740817,LOC107731051 coding upstream 104268 9186660 ~ 9232642 (+)
tecta tecta,LOC107665015,LOC106603728 coding upstream 151628 9159028 ~ 9185282 (+)
tbcelb tbcelb,LOC108260315,LOC108431019,LOC107665031,LOC107595495,LOC107740816 coding upstream 182584 9131889 ~ 9154326 (+)
LOC113531654 bco2,LOC108260375 coding upstream 451783 8868297 ~ 8885127 (+)
c27h9orf78 c28h9orf78,cunh9orf78,zgc:103692,LOC107587408,LOC107726294,LOC103362310,LOC107710755 coding downstream 13634 9351540 ~ 9358888 (+)
rpl7a rpl7a coding downstream 30438 9368344 ~ 9372072 (+)
LOC113531685 NA coding downstream 30583 9368489 ~ 9368564 (+)
LOC113531686 NA coding downstream 30925 9368831 ~ 9368903 (+)
LOC113531687 NA coding downstream 31355 9369261 ~ 9369328 (+)
G383959 NA non-coding upstream 1289 9335258 ~ 9335621 (+)
G383958 NA non-coding upstream 2680 9333677 ~ 9334230 (+)
G383954 NA non-coding upstream 5355 9331262 ~ 9331555 (+)
G383953 NA non-coding upstream 5656 9330629 ~ 9331254 (+)
G383951 NA non-coding upstream 13158 9320671 ~ 9323752 (+)
G383961 NA non-coding downstream 1027 9338933 ~ 9339146 (+)
G383965 NA non-coding downstream 4522 9342428 ~ 9342645 (+)
G383971 NA non-coding downstream 34260 9372166 ~ 9454589 (+)
LOC117596253 NA non-coding downstream 116139 9454045 ~ 9456252 (+)
G384106 NA non-coding downstream 148556 9486462 ~ 9486667 (+)
G383625 LOC108260351 other upstream 561776 8764902 ~ 8775134 (+)
gig2o LOC108260416 other upstream 744529 8590310 ~ 8592381 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other upstream 771653 8558826 ~ 8565257 (+)
G383217 NA other upstream 1123803 8182391 ~ 8213107 (+)
spns3 LOC108260438,LOC108260072 other upstream 1175653 8142583 ~ 8161257 (+)
G384178 ier5l,LOC108228905 other downstream 427834 9765740 ~ 9768036 (+)
G384593 NA other downstream 1040307 10378213 ~ 10379665 (+)
ajm1 c28h9orf172 other downstream 1960068 11297974 ~ 11326055 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other downstream 2380112 11718018 ~ 11835044 (+)
zgc:63972 LOC108260458 other downstream 3452995 12790901 ~ 12800917 (+)

Expression


Co-expression Network