G383971


Basic Information

Item Value
gene id G383971
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 9372166 ~ 9454589 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU455199
GACGATTTTGATCGATGCATCTATTTAAAAGGCTATATTTGAAATGAACTGAGGCACCAATtataactgtgtataaattTAGTCTGATTATCAAAAAAAGGGCAAACAAATGGTGtgtaaattcatattttaaagcTGATGTGCAAATTtaataggctagcaaggtgatttgcctGTAACTTTAGTTTTAAAGTGGTCCTTCTCTTATATTTGCAAATTAATGGTGGGCCTACCCCAGATTCTGGAAAAGGTGGTTCTGAAACTTACTAACTTAAACTATTGTAGCAGATTTAGTGATATCAAATACTGAATCCTTGCCTTAAGAACCAAAATCatgtgtggaagcctgaggtttggACCAAGTCCCTAAGACAAAAAGCATTAGTATCTATGTCGCACATTAATTTGTTTGTCTCTATcatttgggtgtttttttttttccgtttctTTTCCCTAAACATCATAGTCCTTAACATCAAATTTTGCAACTTAGGACTTTCTCCCTTAAATATAAATTTCCCCTATATGCACATTAACATGAAGAGTGGAATTGTgaaataatttcattaacatgaacagcCTTGGGCACAAAAGAGAGATCGTGTACATAAGGAAAAGGGGATAAATCTCAACAAAAGCATCAAATTTATTTGGTACTACAAAGAAACGAGTGTTCTTGAACAGTGTTTCTAAACCTGGCCATGGAGTAATGCTGCCCTGCATAGTACTGTCTTTGCTGTTAGatgattaaatattattctGTGTCTCTTAATCTGATAAAACCCATTAGGGACACAACAGGGGACAGAATTTAAGATCTGTAAAGATCAGTTATCAACtggattttataaaaaaattttatatatatatatata

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: dynein heavy chain 3, axonemal, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU455199 True 875 lncRNA 0.33 2 9372166 9454589

Neighbor

gene id symbol gene type direction distance location
rpl7a rpl7a coding upstream 94 9368344 ~ 9372072 (+)
LOC113531683 NA coding upstream 636 9371459 ~ 9371530 (+)
LOC113531672 NA coding upstream 1029 9371060 ~ 9371137 (+)
LOC113531687 NA coding upstream 2838 9369261 ~ 9369328 (+)
LOC113531686 NA coding upstream 3263 9368831 ~ 9368903 (+)
kank1b LOC108259723 coding downstream 7028 9461617 ~ 9473291 (+)
LOC113531033 LOC108259702,LOC108431004,LOC107730996 coding downstream 33250 9487839 ~ 9500989 (+)
glipr2 LOC108259826 coding downstream 85972 9540561 ~ 9557895 (+)
zgc:55461 tubb4b,tubb2b,LOC107597040,LOC107587400,LOC108258863,LOC107693853,LOC108260450,LOC103024068 coding downstream 117368 9571957 ~ 9574670 (+)
pole3 pole3,LOC107597112,LOC107691032,LOC107587393,LOC107693859 coding downstream 222714 9677303 ~ 9681436 (+)
G383965 NA non-coding upstream 29521 9342428 ~ 9342645 (+)
G383961 NA non-coding upstream 33020 9338933 ~ 9339146 (+)
G383960 usp20 non-coding upstream 34260 9336910 ~ 9337906 (+)
G383959 NA non-coding upstream 36545 9335258 ~ 9335621 (+)
G383958 NA non-coding upstream 37936 9333677 ~ 9334230 (+)
G384106 NA non-coding downstream 31873 9486462 ~ 9486667 (+)
G384125 NA non-coding downstream 71722 9526311 ~ 9526518 (+)
G384134 NA non-coding downstream 106546 9561135 ~ 9561374 (+)
G384144 NA non-coding downstream 227724 9682313 ~ 9686604 (+)
G384182 NA non-coding downstream 336555 9791144 ~ 9791911 (+)
G383625 LOC108260351 other upstream 597032 8764902 ~ 8775134 (+)
gig2o LOC108260416 other upstream 779785 8590310 ~ 8592381 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other upstream 806909 8558826 ~ 8565257 (+)
G383217 NA other upstream 1159059 8182391 ~ 8213107 (+)
spns3 LOC108260438,LOC108260072 other upstream 1210909 8142583 ~ 8161257 (+)
G384178 ier5l,LOC108228905 other downstream 311151 9765740 ~ 9768036 (+)
G384593 NA other downstream 923624 10378213 ~ 10379665 (+)
ajm1 c28h9orf172 other downstream 1843385 11297974 ~ 11326055 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other downstream 2263429 11718018 ~ 11835044 (+)
zgc:63972 LOC108260458 other downstream 3336312 12790901 ~ 12800917 (+)

Expression


Co-expression Network