G384134


Basic Information

Item Value
gene id G384134
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 9561135 ~ 9561374 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU455422
gattcaggtctgggctctggctgggccattccaaaactttaatcttcttctggtgaagccattcttttgttgatttggatgtatgctttgggttgttgtcatgctgaaagatgaagttcttcttcatcttcagctttctagcagaagcctgaaggttttgtgccaatattgaccttgactaaggccccagttccagctgaagaaaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU455422 True 208 lncRNA 0.43 2 9561135 9561374

Neighbor

gene id symbol gene type direction distance location
glipr2 LOC108259826 coding upstream 3240 9540561 ~ 9557895 (+)
LOC113531033 LOC108259702,LOC108431004,LOC107730996 coding upstream 60146 9487839 ~ 9500989 (+)
kank1b LOC108259723 coding upstream 87844 9461617 ~ 9473291 (+)
prkaa1 prkaa1,LOC108260283,LOC107730998,LOC107693840,LOC107691024,LOC107597029 coding upstream 109848 9432528 ~ 9451287 (+)
LOC113531574 LOC108260319 coding upstream 131910 9417458 ~ 9429225 (+)
zgc:55461 tubb4b,tubb2b,LOC107597040,LOC107587400,LOC108258863,LOC107693853,LOC108260450,LOC103024068 coding downstream 10583 9571957 ~ 9574670 (+)
pole3 pole3,LOC107597112,LOC107691032,LOC107587393,LOC107693859 coding downstream 115929 9677303 ~ 9681436 (+)
lrsam1 lrsam1 coding downstream 125665 9687039 ~ 9707115 (+)
ptpa ptpa,LOC104951750,LOC107693860,LOC107587375,LOC102782294 coding downstream 182035 9743409 ~ 9761838 (+)
ntmt1 ntmt1,LOC107693833,LOC107597156,LOC107587381,LOC107740971 coding downstream 418926 9980300 ~ 9987628 (+)
G384125 NA non-coding upstream 34617 9526311 ~ 9526518 (+)
G384106 NA non-coding upstream 74468 9486462 ~ 9486667 (+)
LOC117596253 NA non-coding upstream 104883 9454045 ~ 9456252 (+)
G383971 NA non-coding upstream 106546 9372166 ~ 9454589 (+)
G383965 NA non-coding upstream 218490 9342428 ~ 9342645 (+)
G384144 NA non-coding downstream 120939 9682313 ~ 9686604 (+)
G384182 NA non-coding downstream 229770 9791144 ~ 9791911 (+)
G384183 NA non-coding downstream 232709 9794083 ~ 9794859 (+)
G384189 NA non-coding downstream 243208 9804582 ~ 9805004 (+)
G384197 NA non-coding downstream 252111 9813485 ~ 9813691 (+)
G383625 LOC108260351 other upstream 786001 8764902 ~ 8775134 (+)
gig2o LOC108260416 other upstream 968754 8590310 ~ 8592381 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other upstream 995878 8558826 ~ 8565257 (+)
G383217 NA other upstream 1348028 8182391 ~ 8213107 (+)
spns3 LOC108260438,LOC108260072 other upstream 1399878 8142583 ~ 8161257 (+)
G384178 ier5l,LOC108228905 other downstream 204366 9765740 ~ 9768036 (+)
G384593 NA other downstream 816839 10378213 ~ 10379665 (+)
ajm1 c28h9orf172 other downstream 1736600 11297974 ~ 11326055 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other downstream 2156644 11718018 ~ 11835044 (+)
zgc:63972 LOC108260458 other downstream 3229527 12790901 ~ 12800917 (+)

Expression


Co-expression Network