G384189


Basic Information

Item Value
gene id G384189
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 9804582 ~ 9805004 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU455496
gcctacctcctccagagtgttcctgacttggctagatgttgtgaaggggttgttcttcaataagaaaagaattctgcaatcatccactttagttgttttctgtggtctcccaggccttttggtgttgctgagcttgccagtgcattccttctttttaagaatgtaccaaattgttgatttggccctcctaaagtttctgctatctctctgataggtctgttttggtttttcagcctaatgatggcctccttcacttgcatcaacacctctttggacggcatattgagagttcccatgaacagctaccaaatgcaaattcaacacttggaatcagctccagaccttttatctccttaatttatcatgatataaggaggaaacaggccacagctggccatgaaactgcttatcagtcaattgtcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU455496 True 423 lncRNA 0.43 1 9804582 9805004

Neighbor

gene id symbol gene type direction distance location
ptpa ptpa,LOC104951750,LOC107693860,LOC107587375,LOC102782294 coding upstream 42744 9743409 ~ 9761838 (+)
lrsam1 lrsam1 coding upstream 97467 9687039 ~ 9707115 (+)
pole3 pole3,LOC107597112,LOC107691032,LOC107587393,LOC107693859 coding upstream 123146 9677303 ~ 9681436 (+)
zgc:55461 tubb4b,tubb2b,LOC107597040,LOC107587400,LOC108258863,LOC107693853,LOC108260450,LOC103024068 coding upstream 229912 9571957 ~ 9574670 (+)
glipr2 LOC108259826 coding upstream 246687 9540561 ~ 9557895 (+)
ntmt1 ntmt1,LOC107693833,LOC107597156,LOC107587381,LOC107740971 coding downstream 175296 9980300 ~ 9987628 (+)
gpr107 gpr107,LOC108427620 coding downstream 199992 10004996 ~ 10042974 (+)
ncs1a ncs1,ncs1a,ncs1b,LOC107693863 coding downstream 248789 10053793 ~ 10094807 (+)
fbxw2 fbxw2,LOC107723354 coding downstream 297349 10102353 ~ 10113155 (+)
gas1b LOC108260269 coding downstream 327274 10132278 ~ 10135643 (+)
G384183 NA non-coding upstream 9723 9794083 ~ 9794859 (+)
G384182 NA non-coding upstream 12671 9791144 ~ 9791911 (+)
G384144 NA non-coding upstream 117978 9682313 ~ 9686604 (+)
G384134 NA non-coding upstream 243208 9561135 ~ 9561374 (+)
G384125 NA non-coding upstream 278064 9526311 ~ 9526518 (+)
G384197 NA non-coding downstream 8481 9813485 ~ 9813691 (+)
G384212 NA non-coding downstream 30700 9835704 ~ 9835912 (+)
G384459 LOC103376870 non-coding downstream 317529 10122533 ~ 10122886 (+)
G384461 NA non-coding downstream 322767 10127771 ~ 10127971 (+)
G384466 NA non-coding downstream 324239 10129243 ~ 10129531 (+)
G384178 ier5l,LOC108228905 other upstream 36546 9765740 ~ 9768036 (+)
G383625 LOC108260351 other upstream 1029448 8764902 ~ 8775134 (+)
gig2o LOC108260416 other upstream 1212201 8590310 ~ 8592381 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other upstream 1239325 8558826 ~ 8565257 (+)
G383217 NA other upstream 1591475 8182391 ~ 8213107 (+)
G384593 NA other downstream 573209 10378213 ~ 10379665 (+)
ajm1 c28h9orf172 other downstream 1492970 11297974 ~ 11326055 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other downstream 1913014 11718018 ~ 11835044 (+)
zgc:63972 LOC108260458 other downstream 2985897 12790901 ~ 12800917 (+)
G386294 NA other downstream 4016784 13821788 ~ 13824055 (+)

Expression


Co-expression Network