G384466


Basic Information

Item Value
gene id G384466
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 10129243 ~ 10129531 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU455799
GAAGCATTCTGTCTCAGCTGTGGCAGCTCCTTCATACATGAGCTCTTAAAAAGACAAAGGGAAATTGCCTTTTGGCATTTGGCAAAAAATGGCCTTTTGGCATTTGACCATTTTAATCAGGATGGAATTGTATATGTGGAAAGTCGTTTGAGGCCATGCATAAATAATTTGGCCTAGTCCTTGCTTGACAACAGTGCAGCCAATACGTATTGTTTTTCTGCTGGGGATATGCTGGTCTGTCATACGTCATCCATTAACTGGGCCCAGGACTTGACTCATTGGCTTCACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU455799 True 289 lncRNA 0.43 1 10129243 10129531

Neighbor

gene id symbol gene type direction distance location
fbxw2 fbxw2,LOC107723354 coding upstream 16088 10102353 ~ 10113155 (+)
ncs1a ncs1,ncs1a,ncs1b,LOC107693863 coding upstream 34436 10053793 ~ 10094807 (+)
gpr107 gpr107,LOC108427620 coding upstream 86269 10004996 ~ 10042974 (+)
ntmt1 ntmt1,LOC107693833,LOC107597156,LOC107587381,LOC107740971 coding upstream 141615 9980300 ~ 9987628 (+)
ptpa ptpa,LOC104951750,LOC107693860,LOC107587375,LOC102782294 coding upstream 367405 9743409 ~ 9761838 (+)
gas1b LOC108260269 coding downstream 2747 10132278 ~ 10135643 (+)
dab2 dab2,LOC108260308,LOC107723357,LOC107691042,LOC107597220 coding downstream 40590 10170121 ~ 10183321 (+)
hspb15 NA coding downstream 54557 10184088 ~ 10186161 (+)
LOC113531012 ns:zf-e68,myhz2,myhz1.1,myhz1.2,LOC108415768 coding downstream 82411 10211942 ~ 10223032 (+)
tescb tesc,tescb,LOC108441567,LOC107660769,LOC107723336,LOC107681843,LOC107740949 coding downstream 123056 10252587 ~ 10261745 (+)
G384461 NA non-coding upstream 1272 10127771 ~ 10127971 (+)
G384459 LOC103376870 non-coding upstream 6357 10122533 ~ 10122886 (+)
G384212 NA non-coding upstream 293331 9835704 ~ 9835912 (+)
G384197 NA non-coding upstream 315552 9813485 ~ 9813691 (+)
G384189 NA non-coding upstream 324239 9804582 ~ 9805004 (+)
G384583 NA non-coding downstream 177143 10306674 ~ 10306908 (+)
G384606 NA non-coding downstream 228128 10357659 ~ 10358263 (+)
G384607 NA non-coding downstream 228739 10358270 ~ 10358498 (+)
G384608 NA non-coding downstream 231724 10361255 ~ 10361490 (+)
G384592 NA non-coding downstream 251039 10380570 ~ 10388271 (+)
G384178 ier5l,LOC108228905 other upstream 361207 9765740 ~ 9768036 (+)
G383625 LOC108260351 other upstream 1354109 8764902 ~ 8775134 (+)
gig2o LOC108260416 other upstream 1536862 8590310 ~ 8592381 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other upstream 1563986 8558826 ~ 8565257 (+)
G383217 NA other upstream 1916136 8182391 ~ 8213107 (+)
G384593 NA other downstream 248682 10378213 ~ 10379665 (+)
ajm1 c28h9orf172 other downstream 1168443 11297974 ~ 11326055 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other downstream 1588487 11718018 ~ 11835044 (+)
zgc:63972 LOC108260458 other downstream 2661370 12790901 ~ 12800917 (+)
G386294 NA other downstream 3692257 13821788 ~ 13824055 (+)

Expression


Co-expression Network