G384593


Basic Information

Item Value
gene id G384593
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 10378213 ~ 10379665 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU455978
gcgtgcgtgtgtgtgtgcgtacaaacatatatacacacacagatcagccataacattaaaaccactgacaggtgaagtgaataatatattaggcagcaagtgaacagtcagttcttgaagcaggaaaaatgggtaagtgtaaggatctgagcaacaacaccttcttaaaaaaaaaaactttggcaaggcccaaattgtgatggctagacaacagggtcagagcatctccaaaataaCAGGTTTTCGCAGTGTGtggtggttagtacctaccaaaagtggtccaaggtaggacaaccggtgaacctgtgacagggtcatgggcgctcAATGATGTCAAGCGGTGGGATATAAGTGAACAAATGAACAGTCacttctcgaagttgatgtgttgcaagcaggaaaaatgggcaagtgtaaggatctgagtaactttgacaagggccaaagtgatggctagatgactgggtcagagcatctccaaaacggcagatgttgtggagtgttcccagtatgcagtgattagcacctaccaaaagtggtacaaggaaggacaactggtgaaccgctgacagggtcatgggagcccaaggctcactgatgcatgttgggagtgaaggctagttcatctggtctgatcccacagaagagctattgtagcacaaattgctgaaaatgttcatgctggctatgatagaaaggtgtcagaacaaacagtgcattgcagcttgctgcgtatggggctgcgtagccacagaccggtcagagtgcccatgctgaccccatCCCCctcaaaagcacctacaatagGCACATGAGCATTacaactggaccatggagcaatggaataaagtggcctggtctgatgaatcacgttttcttttacattatgtagAGGactgggtgcatgtgcatcgcttacctggggaagagatgcactatgggaagaaggcaagctggcagaggcagcttgatgctctgggcaatgttctgctgggaaaacttcggtcctggcattcatgtggatgttactttgacatgtaccacctacctaaacattgttgcagaccaagtacaccccttcatggcagcattattccctaatggcagtggcctctttcagcaggataatgtgccctgccacactgcaaaaattgttcaggacaaaaagttcaaggtgttgatttggcctccaaattccccagatctcaatccaatcgagcatctgtgggatgtgctggacaaacaaggccccacctcgcaacttacaggactcaAAGGATCAGCTGCTCACGTCtgggtgccagataccacagcacaccttcagaggtcttgtggagttcatgcctcGACTCAAGTCAAAGCCATTGACTCTCTCGAGTCAAAGCCATTTTCGCGgtacaagggggacctacacaatattaggcagatagttttaatgttgtggctgatctgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU455978 True 1453 TUCP 0.47 1 10378213 10379665

Neighbor

gene id symbol gene type direction distance location
arpc5lb arpc5l,arpc5la,LOC107753090,LOC107571143 coding upstream 75 10367257 ~ 10378138 (+)
cabp7b cabp7,cabp7b,LOC108270594,LOC107587385,LOC107681866 coding upstream 36709 10320064 ~ 10341504 (+)
taok3b LOC108270643,LOC107598017,LOC107723325,LOC107587450,LOC107740964,LOC107681865,LOC108441565 coding upstream 93662 10272650 ~ 10284551 (+)
tescb tesc,tescb,LOC108441567,LOC107660769,LOC107723336,LOC107681843,LOC107740949 coding upstream 116468 10252587 ~ 10261745 (+)
LOC113531012 ns:zf-e68,myhz2,myhz1.1,myhz1.2,LOC108415768 coding upstream 155181 10211942 ~ 10223032 (+)
ppp1cc ppp1cc,LOC108259981,LOC105902522,LOC107567955 coding downstream 405892 10785557 ~ 10825976 (+)
fer fer,LOC108411346,LOC107691727 coding downstream 646203 11025868 ~ 11096141 (+)
mapkap1 mapkap1,LOC107591490 coding downstream 839393 11219058 ~ 11276976 (+)
ttc33 ttc33 coding downstream 1082038 11461703 ~ 11517053 (+)
ptcd2 ptcd2 coding downstream 1263458 11643123 ~ 11681971 (+)
G384608 NA non-coding upstream 16723 10361255 ~ 10361490 (+)
G384607 NA non-coding upstream 19715 10358270 ~ 10358498 (+)
G384606 NA non-coding upstream 19950 10357659 ~ 10358263 (+)
G384583 NA non-coding upstream 71305 10306674 ~ 10306908 (+)
G384466 NA non-coding upstream 248682 10129243 ~ 10129531 (+)
G384592 NA non-coding downstream 905 10380570 ~ 10388271 (+)
LOC113531306 NA non-coding downstream 102469 10482134 ~ 10490299 (+)
G384700 NA non-coding downstream 180340 10560005 ~ 10560651 (+)
G384705 NA non-coding downstream 186639 10566304 ~ 10566511 (+)
G384725 NA non-coding downstream 212611 10592276 ~ 10592482 (+)
G384178 ier5l,LOC108228905 other upstream 610177 9765740 ~ 9768036 (+)
G383625 LOC108260351 other upstream 1603079 8764902 ~ 8775134 (+)
gig2o LOC108260416 other upstream 1785832 8590310 ~ 8592381 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other upstream 1812956 8558826 ~ 8565257 (+)
G383217 NA other upstream 2165106 8182391 ~ 8213107 (+)
ajm1 c28h9orf172 other downstream 918309 11297974 ~ 11326055 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other downstream 1338353 11718018 ~ 11835044 (+)
zgc:63972 LOC108260458 other downstream 2411236 12790901 ~ 12800917 (+)
G386294 NA other downstream 3442123 13821788 ~ 13824055 (+)
G386325 NA other downstream 3446185 13825850 ~ 13828148 (+)

Expression


Co-expression Network