G384606


Basic Information

Item Value
gene id G384606
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 10357659 ~ 10358263 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU456005
GATCAGTTGAATCTCATTGCATTTTTCCTTTACTCTTGTATATAACAGGTCCTGACGGCTATTGGACATACCTGTACTGAGGCTGTACAGCGCTGACAATGAATCACTTCCAATTAAAACTTTACTTATTTTGTCCTCCTTTCTAATCCATTCTAATGCCATCATGATAGCATATAATTCAACTGTGTACACATTCAGATCATTCGTGGTTCATTTGCTTTCCTCACCTCCTTGATTAACTATAAAAATTGCTGATCCAATCCTTCCTGTTTCAGGATCTTTCGACCCATCtgtataaatctgaatataatcTCTGTATTTATCATCCACATATCTGTAGAATTCAGTTACAAGGTCTGcactattgtttattgttttgatttgatGTAATTCAGAATCAACTTCCATGGTTTCAATCTTCCATACTGGAAAGTTCGGCCATACCACAGTTGGGCAGAACTCTTTTCCACTCACCCCCAAATCTCTAGCTGCCTCATCTCCTATCCATCCAAAACTAAACTTATGCGCCCTTTTCTTTTCCCAGCTAGCTTGCAACACTCTCTTAGTAGGATGACCCTCTCTATGTCCCTTTAGATTAATCCAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU456005 True 605 lncRNA 0.38 1 10357659 10358263

Neighbor

gene id symbol gene type direction distance location
cabp7b cabp7,cabp7b,LOC108270594,LOC107587385,LOC107681866 coding upstream 16155 10320064 ~ 10341504 (+)
taok3b LOC108270643,LOC107598017,LOC107723325,LOC107587450,LOC107740964,LOC107681865,LOC108441565 coding upstream 73108 10272650 ~ 10284551 (+)
tescb tesc,tescb,LOC108441567,LOC107660769,LOC107723336,LOC107681843,LOC107740949 coding upstream 95914 10252587 ~ 10261745 (+)
LOC113531012 ns:zf-e68,myhz2,myhz1.1,myhz1.2,LOC108415768 coding upstream 134627 10211942 ~ 10223032 (+)
hspb15 NA coding upstream 171498 10184088 ~ 10186161 (+)
arpc5lb arpc5l,arpc5la,LOC107753090,LOC107571143 coding downstream 8994 10367257 ~ 10378138 (+)
ppp1cc ppp1cc,LOC108259981,LOC105902522,LOC107567955 coding downstream 427294 10785557 ~ 10825976 (+)
fer fer,LOC108411346,LOC107691727 coding downstream 667605 11025868 ~ 11096141 (+)
mapkap1 mapkap1,LOC107591490 coding downstream 860795 11219058 ~ 11276976 (+)
ttc33 ttc33 coding downstream 1103440 11461703 ~ 11517053 (+)
G384583 NA non-coding upstream 50751 10306674 ~ 10306908 (+)
G384466 NA non-coding upstream 228128 10129243 ~ 10129531 (+)
G384461 NA non-coding upstream 229688 10127771 ~ 10127971 (+)
G384459 LOC103376870 non-coding upstream 234773 10122533 ~ 10122886 (+)
G384212 NA non-coding upstream 521747 9835704 ~ 9835912 (+)
G384607 NA non-coding downstream 7 10358270 ~ 10358498 (+)
G384608 NA non-coding downstream 2992 10361255 ~ 10361490 (+)
G384592 NA non-coding downstream 22307 10380570 ~ 10388271 (+)
LOC113531306 NA non-coding downstream 123871 10482134 ~ 10490299 (+)
G384700 NA non-coding downstream 201742 10560005 ~ 10560651 (+)
G384178 ier5l,LOC108228905 other upstream 589623 9765740 ~ 9768036 (+)
G383625 LOC108260351 other upstream 1582525 8764902 ~ 8775134 (+)
gig2o LOC108260416 other upstream 1765278 8590310 ~ 8592381 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other upstream 1792402 8558826 ~ 8565257 (+)
G383217 NA other upstream 2144552 8182391 ~ 8213107 (+)
G384593 NA other downstream 19950 10378213 ~ 10379665 (+)
ajm1 c28h9orf172 other downstream 939711 11297974 ~ 11326055 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other downstream 1359755 11718018 ~ 11835044 (+)
zgc:63972 LOC108260458 other downstream 2432638 12790901 ~ 12800917 (+)
G386294 NA other downstream 3463525 13821788 ~ 13824055 (+)

Expression


Co-expression Network