G384728


Basic Information

Item Value
gene id G384728
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 10594450 ~ 10594665 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU456136
GTCCATTTGAATTGCATTTGCCATGTCTTACGAGTTATGGCCCGGTCATATTTAAACAGCAATTGCAATTACCCCATTTGCTATTTCACTTCCTCGGTGTCGCGTATGGAGcctgccaaaattcaaatgtaTTCGCAATTCTCTTCGCATTTGCATACAAACATGCCCCATAGTACACTCTCACCCCTAGCAATGATTGGTAGGTTTATGTGCAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU456136 True 216 lncRNA 0.43 1 10594450 10594665

Neighbor

gene id symbol gene type direction distance location
arpc5lb arpc5l,arpc5la,LOC107753090,LOC107571143 coding upstream 216312 10367257 ~ 10378138 (+)
cabp7b cabp7,cabp7b,LOC108270594,LOC107587385,LOC107681866 coding upstream 252946 10320064 ~ 10341504 (+)
taok3b LOC108270643,LOC107598017,LOC107723325,LOC107587450,LOC107740964,LOC107681865,LOC108441565 coding upstream 309899 10272650 ~ 10284551 (+)
tescb tesc,tescb,LOC108441567,LOC107660769,LOC107723336,LOC107681843,LOC107740949 coding upstream 332705 10252587 ~ 10261745 (+)
LOC113531012 ns:zf-e68,myhz2,myhz1.1,myhz1.2,LOC108415768 coding upstream 371418 10211942 ~ 10223032 (+)
ppp1cc ppp1cc,LOC108259981,LOC105902522,LOC107567955 coding downstream 190892 10785557 ~ 10825976 (+)
fer fer,LOC108411346,LOC107691727 coding downstream 431203 11025868 ~ 11096141 (+)
mapkap1 mapkap1,LOC107591490 coding downstream 624393 11219058 ~ 11276976 (+)
ttc33 ttc33 coding downstream 867038 11461703 ~ 11517053 (+)
ptcd2 ptcd2 coding downstream 1048458 11643123 ~ 11681971 (+)
G384725 NA non-coding upstream 1968 10592276 ~ 10592482 (+)
G384705 NA non-coding upstream 27939 10566304 ~ 10566511 (+)
G384700 NA non-coding upstream 33799 10560005 ~ 10560651 (+)
LOC113531306 NA non-coding upstream 104151 10482134 ~ 10490299 (+)
G384592 NA non-coding upstream 206179 10380570 ~ 10388271 (+)
G384740 NA non-coding downstream 14287 10608952 ~ 10609617 (+)
G384859 NA non-coding downstream 95475 10690140 ~ 10690641 (+)
G384867 NA non-coding downstream 188739 10783404 ~ 10783799 (+)
G384868 NA non-coding downstream 190036 10784701 ~ 10784934 (+)
G384887 mcc non-coding downstream 328219 10922884 ~ 10937401 (+)
G384593 NA other upstream 214785 10378213 ~ 10379665 (+)
G384178 ier5l,LOC108228905 other upstream 826414 9765740 ~ 9768036 (+)
G383625 LOC108260351 other upstream 1819316 8764902 ~ 8775134 (+)
gig2o LOC108260416 other upstream 2002069 8590310 ~ 8592381 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other upstream 2029193 8558826 ~ 8565257 (+)
ajm1 c28h9orf172 other downstream 703309 11297974 ~ 11326055 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other downstream 1123353 11718018 ~ 11835044 (+)
zgc:63972 LOC108260458 other downstream 2196236 12790901 ~ 12800917 (+)
G386294 NA other downstream 3227123 13821788 ~ 13824055 (+)
G386325 NA other downstream 3231185 13825850 ~ 13828148 (+)

Expression


Co-expression Network