G385025


Basic Information

Item Value
gene id G385025
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 11385508 ~ 11389515 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU456456
GGCCAACTTCAAATTTCTGGCCCATATACAGGGCCCACATACAGGAGACCCGGTTGAGCCTCTGAAAATCATTACAGATCTGTACACTGCCCTTGGTTTTCCGAACTACAACAATGGGGCTAGACCAGAGGTTAGAGGACGCCAATGATGCCATCTTGCAGCATTATGGCTTGCTCATCAATAGCCCAATGAGGGGCCTCTGGGACATGGTAGGGCCACTGCCTGATCACCACTCCAGTCAGGGTTTGAATGTCATGCTGGACCAGTTGTGTTAGGCCTGGTTACCCTCAAAAGACATCTGCAAATTGAACTATCAGCACCATGAGGTCTTGCTGCTGGGTGGGGGAATAATCCTCTCGCTTTTTAATGAAGGTATGCCACAGCAGGTCAGTGGgggccagttttttttttagcaaacatATAGATCATGCCCCACTACAATGGATAGCCAAGGCAAATGATACTAATTTCCACATCACTTGTTAGTTTCTCTCACTGCAAGATTGCTCATTTCAGGTGCAGCATCAAGTGGGGGTCCACCTCGGAATGCTGATGGGCTGTCCCGACACTACAGACTCTGGGCCCAGTCCTCTCCAGTGTTTGCTGAGCCAGCGTTTTTGTCGCTTATCATCAGGGCTGCCGCAATGCCGGATTCCCTCAGCTTAGAAGCTGCCAAATCTTCAGCCACACCACTGCAGGCCTCTCACCTCATCATCTACTCTCATGCTTTCCGTCAGCCCTGCCACTCCCTTTCCCACACTTATGATTAACTACAACCCCCATGAGTGTTTATTCACCCATTTCACATCTatcagtgtgtttatgttcGTCCTTGCTCCAGCACTTAACACCAAAGTGTTTGTTTAGGATGCATCATCCGtgcaatctgaataatgtatttgtcctgagcagttaagcTACCcactgttctttaaaaaaaatcctccaggtcttGCACATCATTCAGTTTTCTGCATATTCTGCATAGACCCCTTTCCAAAGTGGCTGtgggtgtaaattgttatttacatgtttcccggaagacaaaataatatcttatgtagcttctgaagggcagtactaaatgaaaaaaaagatctttaaacaaaataacaatttacactgatcaccctgttcaaaagtttacatccccctggctcttaatgtgtgtgtttccttcttgagcatcagtgaatgtttgcaccttttgaaATAGTTTGAGTCCTTCAGTTGTCCTCTGTGTGAAAaaatggatctcaacatcatacagccactgttggaaaggggtcagaAGATGCAGAAGATactggaaaagcaaataatgtggTGGACCTTgaggatttttctgaaaaacagtgGGCAGTTTGATATTGGTGTAGTGTATTGATATTGGCTGATATTCAAGGTTTTGGTATCGATATTgggaaagaaaaagtggtatcatgCCATCTCTAATAAcgatataaaaatatttttattttcttcataattatataattaaggCATTAAggcacaattaattaattaattaattatcacCCACTGTgtgaaaaatgctttaaaaatggaCAACTGCTGTGGTCCACTGTTAAATTTGCAACATTGATTAAACATGCTCGAAATTTGTGTAtgcatacactttatttataagCAGCCTAAAGATGTCACAAGAAAATTACTTACCTGGAACACTGATAGATTTCgtccaaaacacacaacaaaagtCTGAGCAAGAGGcaggcatgttttattttagcatagattttagactttttttaaagaatttttctACCACAAATGGTTAAGATGTAGGTCGTAGCATGGGACTTGGCATAGTGTggattaaaagtatttttaaactattgtTGCAGAAATTAGCTGCACAGATTGCACAGTTAAAGGGTTCTGAGGGTTAAGTCCAGAGAGAACAACTTGGGAAGATACATATTTCATTACTGACAAATATCACACCACAAAGACATAAAGAATGCTTAGTAGTGCTGTTACACAACAATAGTGGGTAATAGTAGTTATTTTATAACCAGTTTATATGTATTTAAGCAAATACTGTCTATGACAGTACACAGCCATGACAGTCCAAGTTATCGGCTAGGCTTTATTTGTGAAGGATTACCATGGAAAATACAGGCAGGTCCATACAGACTTGGACACAGAAAAagatattgttattttagctgtctaccacaggtatactggagttgaaattaaataatgaacaagTGCAGACTTTCTGCTTTAATTTAAGGGACCAacagtaattggacaattggcttctccactgttccatggccaggtttGTGGTATTCCTGCATTATTTCACTAAGTAAGCATATGCAAGTGTGACATTTGCATTGGTGAGCTCAAGAACACCAAAAGGCcagaaaaaacatggaaaacaacTGAATTCCTTCCCTgaaaaaaccccttcacaacagtcagccagatcaagaacactctccagaaGGTAGGCATAtttgtgtcaaagtcaacaatcaagagaagttTTCagcagagtaaatacagagggtttaccacaagtAAAACTAGTAAGCCTCAAAAAAGGAAGAACAGATTATAGTTTTCCAAAATCATCTAAATAAGCCCTTACAATTCTGCAAGAACATCcaatggacagatgagacaaaggtCAATCTGCAccagaagaaagaaacagagcaTCACTAGGGACAAAACCCAGCATCTGCTGATGTCTGTGGGTTCTAGGCAgccactgactgcaaaggatttgcaatcGAAtactaaaaatgacaatttaaattatcattgttagtttgtccaattatttttggtCCATTAAAAAGGGAAGGACCAcataaaaatgctgtaattcctGTAATTCACTGGTAAATCCCtgtaaattaaatctgaaagtctgcattttgagctcatattcagtatttaatttcacctccaatatactgtggtagacagatgaacaataacattatcaatgtccaaatatttatggacctgactgtatatggaaaataaaactgttaaatGTATGTTAAAGGATTGTTATCAGCCTTGCTAAAAACATTATACTGCCTGCAAGCGAGCAAAGACGAGAAAAGTGCTTACGAGTGTCCACTGTCTCCTGAATCGGGATAAAGCCAACGGGCAGTGTATCTTTAATGTCAATCAGCTTCATGTCCACCAGGACGTTTCCTAAATGACTCTGTGGAAAGATGCACACAATATGTAAAGATCATGAGGAAAGCAGTAGTGGCCTAGTGACTTAGACTTTAGCCCAGATAAACCAGAATTATTTCaaggaaaacatttttcaagcaatagTGTTTAAATTAGCCAACAATTGTTTGAGAGTTCTGTTGAGACACTGTCAGAGAGTGCAGCATCATGCAGGGCCGGTGTTCAAAGACAGCTGCAATGCAGCTACAATGATGTTCTCTGCAGTGTCTTGGGTAAGTGTGGTGCCTAATATTCTGCTGCTTTgttacatacatttaaaaagcttGGTGAATGCTTTAGTGTACTAACTCTCTTTGGTTTTCATAACATTCAGAGCATGAGAACAGCTTACTATTTTCACCAATGTAATGCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU456456 True 3608 lncRNA 0.40 2 11385508 11389515

Neighbor

gene id symbol gene type direction distance location
mapkap1 mapkap1,LOC107591490 coding upstream 108532 11219058 ~ 11276976 (+)
fer fer,LOC108411346,LOC107691727 coding upstream 289367 11025868 ~ 11096141 (+)
ppp1cc ppp1cc,LOC108259981,LOC105902522,LOC107567955 coding upstream 559532 10785557 ~ 10825976 (+)
arpc5lb arpc5l,arpc5la,LOC107753090,LOC107571143 coding upstream 1007370 10367257 ~ 10378138 (+)
cabp7b cabp7,cabp7b,LOC108270594,LOC107587385,LOC107681866 coding upstream 1044004 10320064 ~ 10341504 (+)
ttc33 ttc33 coding downstream 72188 11461703 ~ 11517053 (+)
ptcd2 ptcd2 coding downstream 253608 11643123 ~ 11681971 (+)
btf3 btf3,LOC107655933 coding downstream 612759 12002274 ~ 12010222 (+)
arhgef28a arhgef28 coding downstream 636545 12026060 ~ 12118438 (+)
LOC113531115 NA coding downstream 864312 12253827 ~ 12264084 (+)
G385014 NA non-coding upstream 37692 11347602 ~ 11347816 (+)
LOC117596271 NA non-coding upstream 40913 11330733 ~ 11344595 (+)
G384989 NA non-coding upstream 99743 11285326 ~ 11285765 (+)
G384977 NA non-coding upstream 240481 11144743 ~ 11145027 (+)
LOC113531091 NA non-coding upstream 253641 11130876 ~ 11131867 (+)
LOC117596234 NA non-coding downstream 237204 11626719 ~ 11640040 (+)
G385187 NA non-coding downstream 279978 11669493 ~ 11672040 (+)
G385195 NA non-coding downstream 354681 11744196 ~ 11744931 (+)
LOC117596260 NA non-coding downstream 792944 12182459 ~ 12190468 (+)
G385429 NA non-coding downstream 891074 12280589 ~ 12322801 (+)
ajm1 c28h9orf172 other upstream 59453 11297974 ~ 11326055 (+)
G384593 NA other upstream 1005843 10378213 ~ 10379665 (+)
G384178 ier5l,LOC108228905 other upstream 1617472 9765740 ~ 9768036 (+)
G383625 LOC108260351 other upstream 2610374 8764902 ~ 8775134 (+)
gig2o LOC108260416 other upstream 2793127 8590310 ~ 8592381 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other downstream 328503 11718018 ~ 11835044 (+)
zgc:63972 LOC108260458 other downstream 1401386 12790901 ~ 12800917 (+)
G386294 NA other downstream 2432273 13821788 ~ 13824055 (+)
G386325 NA other downstream 2436335 13825850 ~ 13828148 (+)
c27h11orf88 c28h11orf88 other downstream 3773869 15163384 ~ 15233692 (+)

Expression


Co-expression Network