Gene
RNA
| Item | Value |
|---|---|
| gene id | G385195 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047621.1 |
| NCBI id | CM018567.1 |
| chromosome length | 18889892 |
| location | 11744196 ~ 11744931 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU456672 | True | 695 | lncRNA | 0.36 | 2 | 11744196 | 11744931 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| ptcd2 | ptcd2 | coding | upstream | 62225 | 11643123 ~ 11681971 (+) |
| ttc33 | ttc33 | coding | upstream | 227143 | 11461703 ~ 11517053 (+) |
| mapkap1 | mapkap1,LOC107591490 | coding | upstream | 467220 | 11219058 ~ 11276976 (+) |
| fer | fer,LOC108411346,LOC107691727 | coding | upstream | 648055 | 11025868 ~ 11096141 (+) |
| ppp1cc | ppp1cc,LOC108259981,LOC105902522,LOC107567955 | coding | upstream | 918220 | 10785557 ~ 10825976 (+) |
| btf3 | btf3,LOC107655933 | coding | downstream | 257343 | 12002274 ~ 12010222 (+) |
| arhgef28a | arhgef28 | coding | downstream | 281129 | 12026060 ~ 12118438 (+) |
| LOC113531115 | NA | coding | downstream | 508896 | 12253827 ~ 12264084 (+) |
| hexb | hexb | coding | downstream | 524245 | 12269176 ~ 12286124 (+) |
| fibcd1 | fibcd1,LOC108259714,LOC108428067,LOC107739453,LOC107693814,LOC105015243,LOC103369860,LOC107596897,LOC107700935,LOC106562973 | coding | downstream | 860350 | 12605281 ~ 12716830 (+) |
| G385187 | NA | non-coding | upstream | 72156 | 11669493 ~ 11672040 (+) |
| LOC117596234 | NA | non-coding | upstream | 104156 | 11626719 ~ 11640040 (+) |
| G385025 | NA | non-coding | upstream | 354681 | 11385508 ~ 11389515 (+) |
| G385014 | NA | non-coding | upstream | 396380 | 11347602 ~ 11347816 (+) |
| LOC117596271 | NA | non-coding | upstream | 399601 | 11330733 ~ 11344595 (+) |
| LOC117596260 | NA | non-coding | downstream | 437528 | 12182459 ~ 12190468 (+) |
| G385429 | NA | non-coding | downstream | 535658 | 12280589 ~ 12322801 (+) |
| LOC117596248 | NA | non-coding | downstream | 615682 | 12360613 ~ 12403419 (+) |
| G385588 | NA | non-coding | downstream | 724792 | 12469723 ~ 12470164 (+) |
| G385594 | NA | non-coding | downstream | 802906 | 12547837 ~ 12548116 (+) |
| ajm1 | c28h9orf172 | other | upstream | 418141 | 11297974 ~ 11326055 (+) |
| G384593 | NA | other | upstream | 1364531 | 10378213 ~ 10379665 (+) |
| G384178 | ier5l,LOC108228905 | other | upstream | 1976160 | 9765740 ~ 9768036 (+) |
| G383625 | LOC108260351 | other | upstream | 2969062 | 8764902 ~ 8775134 (+) |
| gig2o | LOC108260416 | other | upstream | 3151815 | 8590310 ~ 8592381 (+) |
| zgc:63972 | LOC108260458 | other | downstream | 1045970 | 12790901 ~ 12800917 (+) |
| G386294 | NA | other | downstream | 2076857 | 13821788 ~ 13824055 (+) |
| G386325 | NA | other | downstream | 2080919 | 13825850 ~ 13828148 (+) |
| c27h11orf88 | c28h11orf88 | other | downstream | 3418453 | 15163384 ~ 15233692 (+) |
| sik2a | sik2 | other | downstream | 3500074 | 15245005 ~ 15274079 (+) |
