G385594


Basic Information

Item Value
gene id G385594
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 12547837 ~ 12548116 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU457132
gagaattttaggatgagacgacagtcatttatgacactatgctcaatgctgtaggggaacatggcacctggtgaggctacggtcagagccccagtaccgctgacagccgtgcgtcatacgtcattacgtgatttgtacgtcattgcacatgcgcagaactatctggtttcattttcaatccgatgaagtgtttacatgtcctctccatcggattagaaaaggtttaaaccaccccttacgatccgaatgaaattttaatcggttttggtcAATTCATTCc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU457132 True 280 lncRNA 0.45 1 12547837 12548116

Neighbor

gene id symbol gene type direction distance location
hexb hexb coding upstream 261713 12269176 ~ 12286124 (+)
LOC113531115 NA coding upstream 283753 12253827 ~ 12264084 (+)
arhgef28a arhgef28 coding upstream 429399 12026060 ~ 12118438 (+)
btf3 btf3,LOC107655933 coding upstream 537615 12002274 ~ 12010222 (+)
ptcd2 ptcd2 coding upstream 865866 11643123 ~ 11681971 (+)
fibcd1 fibcd1,LOC108259714,LOC108428067,LOC107739453,LOC107693814,LOC105015243,LOC103369860,LOC107596897,LOC107700935,LOC106562973 coding downstream 57165 12605281 ~ 12716830 (+)
ttll11 ttll11,LOC107700937,LOC107596909 coding downstream 448142 12996258 ~ 13020139 (+)
specc1 specc1 coding downstream 653688 13201804 ~ 13272662 (+)
adora2b adora2b,LOC108428193,LOC107665025,LOC107712140 coding downstream 725769 13273885 ~ 13285031 (+)
c27h11orf54 c28h11orf54,cunh11orf54,zgc:85789,LOC107709398,LOC107587676,LOC107690214 coding downstream 969354 13517470 ~ 13522726 (+)
G385588 NA non-coding upstream 77673 12469723 ~ 12470164 (+)
LOC117596248 NA non-coding upstream 144418 12360613 ~ 12403419 (+)
G385429 NA non-coding upstream 225036 12280589 ~ 12322801 (+)
LOC117596260 NA non-coding upstream 357369 12182459 ~ 12190468 (+)
G385195 NA non-coding upstream 802906 11744196 ~ 11744931 (+)
LOC117596213 NA non-coding downstream 78376 12626492 ~ 12627278 (+)
G385624 NA non-coding downstream 170569 12718685 ~ 12719442 (+)
G385698 NA non-coding downstream 253243 12801359 ~ 12802002 (+)
G385697 NA non-coding downstream 256912 12805028 ~ 12805853 (+)
G385695 NA non-coding downstream 259207 12807323 ~ 12809012 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other upstream 712793 11718018 ~ 11835044 (+)
ajm1 c28h9orf172 other upstream 1221782 11297974 ~ 11326055 (+)
G384593 NA other upstream 2168172 10378213 ~ 10379665 (+)
G384178 ier5l,LOC108228905 other upstream 2779801 9765740 ~ 9768036 (+)
G383625 LOC108260351 other upstream 3772703 8764902 ~ 8775134 (+)
zgc:63972 LOC108260458 other downstream 242785 12790901 ~ 12800917 (+)
G386294 NA other downstream 1273672 13821788 ~ 13824055 (+)
G386325 NA other downstream 1277734 13825850 ~ 13828148 (+)
c27h11orf88 c28h11orf88 other downstream 2615268 15163384 ~ 15233692 (+)
sik2a sik2 other downstream 2696889 15245005 ~ 15274079 (+)

Expression


Co-expression Network