G385624


Basic Information

Item Value
gene id G385624
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 12718685 ~ 12719442 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU457162
GTTCAATTTCAGAAAAGTTACCTACTTAAAACATACTAACTCCATCCCGAGCTCAAATCTAGCCTTTTCCTGTCAATTGACATATGGAACATTGTAGGAACAATACAATGTATTACACTTCCATATGATAATATGTTTCACATTTGCATACGGCTTACAGTAGATAGCACAATGAAGTCAGTTTATACACAGCCCATGTCAAATCCATATTCAAGATGTGCATCAATAAAGTTAGAGCTGAAAAATGTGTCCTGTTCCCTGTAGCTTTGTAAGATGAGGCTTGTAGTTAACCAGTCAGTCGTTGAAATTGGGATGAAATAATGAATGTCTgggatgaaataaaatgtgaaagtaGGGCTAAATGATTTATGCTGATTTAAGGTCAACTGTGGGTCCTGAAGCAAGTCTCTTCTTTAATCTCCTGAGAGCTTTATTGTGTAGATTTTCTGTACATTGTGTTTTAGAACGTTTTGATGCATGTACAATGTTTTTGTATatacaaaagcacaaaaagcACAGCAATTTTGatgaacatttgaaaaataaaacattgcaaAATTTATACTCCCATATTCTGTCACTTCGTGTGAAACCTGAGACTTGAGCTGCTTGGATTGCAACGGGATTGTAAAGACTAAGACAATTTGGGACCAAATGAAGAAGATGGAGCATCAGAGACATTCAGAAAAACACCAATGTTCCCCAAACCATATTtcaccagtgttttttttcccttgattTGAGTGATTTAAAGTTAC

Function

GO: NA

KEGG:

id description
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU457162 True 758 lncRNA 0.35 1 12718685 12719442

Neighbor

gene id symbol gene type direction distance location
fibcd1 fibcd1,LOC108259714,LOC108428067,LOC107739453,LOC107693814,LOC105015243,LOC103369860,LOC107596897,LOC107700935,LOC106562973 coding upstream 1855 12605281 ~ 12716830 (+)
hexb hexb coding upstream 432561 12269176 ~ 12286124 (+)
LOC113531115 NA coding upstream 454601 12253827 ~ 12264084 (+)
arhgef28a arhgef28 coding upstream 600247 12026060 ~ 12118438 (+)
btf3 btf3,LOC107655933 coding upstream 708463 12002274 ~ 12010222 (+)
ttll11 ttll11,LOC107700937,LOC107596909 coding downstream 276816 12996258 ~ 13020139 (+)
specc1 specc1 coding downstream 482362 13201804 ~ 13272662 (+)
adora2b adora2b,LOC108428193,LOC107665025,LOC107712140 coding downstream 554443 13273885 ~ 13285031 (+)
c27h11orf54 c28h11orf54,cunh11orf54,zgc:85789,LOC107709398,LOC107587676,LOC107690214 coding downstream 798028 13517470 ~ 13522726 (+)
LOC113531575 spata22 coding downstream 803575 13523017 ~ 13631816 (+)
LOC117596213 NA non-coding upstream 91407 12626492 ~ 12627278 (+)
G385594 NA non-coding upstream 170569 12547837 ~ 12548116 (+)
G385588 NA non-coding upstream 248521 12469723 ~ 12470164 (+)
LOC117596248 NA non-coding upstream 315266 12360613 ~ 12403419 (+)
G385429 NA non-coding upstream 395884 12280589 ~ 12322801 (+)
G385698 NA non-coding downstream 81917 12801359 ~ 12802002 (+)
G385697 NA non-coding downstream 85586 12805028 ~ 12805853 (+)
G385695 NA non-coding downstream 87881 12807323 ~ 12809012 (+)
G385823 NA non-coding downstream 275603 12995045 ~ 12996216 (+)
G385892 NA non-coding downstream 432550 13151992 ~ 13152207 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other upstream 883641 11718018 ~ 11835044 (+)
ajm1 c28h9orf172 other upstream 1392630 11297974 ~ 11326055 (+)
G384593 NA other upstream 2339020 10378213 ~ 10379665 (+)
G384178 ier5l,LOC108228905 other upstream 2950649 9765740 ~ 9768036 (+)
G383625 LOC108260351 other upstream 3943551 8764902 ~ 8775134 (+)
zgc:63972 LOC108260458 other downstream 71459 12790901 ~ 12800917 (+)
G386294 NA other downstream 1102346 13821788 ~ 13824055 (+)
G386325 NA other downstream 1106408 13825850 ~ 13828148 (+)
c27h11orf88 c28h11orf88 other downstream 2443942 15163384 ~ 15233692 (+)
sik2a sik2 other downstream 2525563 15245005 ~ 15274079 (+)

Expression


Co-expression Network