G385695


Basic Information

Item Value
gene id G385695
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 12807323 ~ 12809012 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU457236
GCCACATCTGAAACACAACCATTTACAAGTAGTACTTGGCATTAAAAACAATGGCAATACAATTTTTAAGacacttggtgtttttttttcttttttcctcttttttgtgttttaatttcaaTATCAGCAACAGTTTCAGCGACAGTCTAAACAGTTAATATTGATTCAAATACAAAAACCACTGCGGAAAACAATGAGGATCGAGCAAACAGAGGGACAGGAGGCAAAGAgaacaaaaatgtcaaattataaatatatattccgTCAGTcaccagcaccacacactcCTTTGAACAGGTGATTAAAAACTGCAGTGCGACAATaatacactgaaaatctgaattTGCAAAAATAGTCCCACGATTTCGCTTTTCAGTCAGGCTGCTACTAGTGTTGGATAATGGTTGTTGAGGCATATACAGAGTCAGAAAAAATTTTGTTAGAGAGGGCATGCATTTAGTGTAACATGATGCCATATCTGTCTTTCCCTATCTTATATGCCAATATCTTCATCTCCCATATCCATGTTTGAGATGGGACATAAACATACAGGTTACTACTTCACTATCAGTTACTTTACTCCCTCTTTGGCCTATTAAATTAGAACTTAATCTGCAGTCTGTATTCAAACCCTTagctatttatattattttctccGTTCTATGTAAACTGTCTATGACTTGTGAAGGTATCAAATCCTAATTCTATTGTTTCAGTATACAAAATCCCTTTTTAGTCTGTATTATGATTTAAGGGAGGCATGCAGGTGTTTGGGAGCCCTTTTAATCCAGaggcaaaaacatttttttttttaaagagtgcaCTTACATAGTAACACATTAGGCATCAAGAGCCGAGGCGCATGTGCTAATGAAACAAAGCTTGTTGTGTCCGCTTAATGAAACAGCTATAGGTAGTGGTTTCTGAGTGTTACTACTTGCCTCATGGGAAATGTAATCGATGTCCAGTCTGATTTAATGCAGTTGCTGGAGTTGTAGGAAAATGGCACTTGTGGGAGACTTCTGCCCTGTTTGCCAAAGTTGTGCAGGTCAAGATTGTTAGCTTGGGTATATCATAACATTTAACTTACCTATATTCTATATTAAAGTTTCATCACTAAATATATTTAGGaagaatatttatttgtgtttatgtatatgtgtattttaaTGTGTGCAGCCACAGCCTGAGatgtatatatagtttatatttttaactcTGAAATAATTACAATGTGCAATTGACAGATAAATCACAACACGATTTAAAATAGATAATCTGACATAGGTGCTTCAGATTTACATTCAGGCTTGGTTGCTATGCTATGCTTTGGATCATATCCTTTGACCTGGAAATATAACCTATGACCTTAAGTTTTCCATGGCTACATTATCTTTAAGTGTATCTGATAAGTTCTGTGTCATCAAAACCTGACTGAGGCCCTGTGACTTACTTACAAAAGGGAGGAAGTCTTTTCAAATTCTTATCCCAGAgctcatccatttttttcttttccttacaGCATTTTGATATTATGACTGTTGCTAAGTTCAGCTTGAGTCTCACTGagcaaacagacagaaatacacgcacacgcacacacacacacacacacacacacacaagtgcattGTAACCTTCATATCACACTGGTTATTGTAAACTCACTCAGGTGCAAAGCTTTGTGGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU457236 True 1690 lncRNA 0.36 1 12807323 12809012

Neighbor

gene id symbol gene type direction distance location
fibcd1 fibcd1,LOC108259714,LOC108428067,LOC107739453,LOC107693814,LOC105015243,LOC103369860,LOC107596897,LOC107700935,LOC106562973 coding upstream 90493 12605281 ~ 12716830 (+)
hexb hexb coding upstream 521199 12269176 ~ 12286124 (+)
LOC113531115 NA coding upstream 543239 12253827 ~ 12264084 (+)
arhgef28a arhgef28 coding upstream 688885 12026060 ~ 12118438 (+)
btf3 btf3,LOC107655933 coding upstream 797101 12002274 ~ 12010222 (+)
ttll11 ttll11,LOC107700937,LOC107596909 coding downstream 187246 12996258 ~ 13020139 (+)
specc1 specc1 coding downstream 392792 13201804 ~ 13272662 (+)
adora2b adora2b,LOC108428193,LOC107665025,LOC107712140 coding downstream 464873 13273885 ~ 13285031 (+)
c27h11orf54 c28h11orf54,cunh11orf54,zgc:85789,LOC107709398,LOC107587676,LOC107690214 coding downstream 708458 13517470 ~ 13522726 (+)
LOC113531575 spata22 coding downstream 714005 13523017 ~ 13631816 (+)
G385697 NA non-coding upstream 1470 12805028 ~ 12805853 (+)
G385698 NA non-coding upstream 5321 12801359 ~ 12802002 (+)
G385624 NA non-coding upstream 87881 12718685 ~ 12719442 (+)
LOC117596213 NA non-coding upstream 180045 12626492 ~ 12627278 (+)
G385594 NA non-coding upstream 259207 12547837 ~ 12548116 (+)
G385823 NA non-coding downstream 186033 12995045 ~ 12996216 (+)
G385892 NA non-coding downstream 342980 13151992 ~ 13152207 (+)
G386004 NA non-coding downstream 377694 13186706 ~ 13186929 (+)
G386015 NA non-coding downstream 404507 13213519 ~ 13213978 (+)
G385998 NA non-coding downstream 477951 13286963 ~ 13288280 (+)
zgc:63972 LOC108260458 other upstream 6406 12790901 ~ 12800917 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other upstream 972279 11718018 ~ 11835044 (+)
ajm1 c28h9orf172 other upstream 1481268 11297974 ~ 11326055 (+)
G384593 NA other upstream 2427658 10378213 ~ 10379665 (+)
G384178 ier5l,LOC108228905 other upstream 3039287 9765740 ~ 9768036 (+)
G386294 NA other downstream 1012776 13821788 ~ 13824055 (+)
G386325 NA other downstream 1016838 13825850 ~ 13828148 (+)
c27h11orf88 c28h11orf88 other downstream 2354372 15163384 ~ 15233692 (+)
sik2a sik2 other downstream 2435993 15245005 ~ 15274079 (+)
zgc:193711 LOC108260397 other downstream 2545348 15354360 ~ 15361054 (+)

Expression


Co-expression Network