zgc:63972 (LOC108260458)


Basic Information

Item Value
gene id zgc:63972
gene name LOC108260458
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 12790901 ~ 12800917 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU457237
TGTCAACGCTGTAACCGCAAGACTAGTCGTGTCAAGGTTTCGAAAGAAACGACATGTAAACAGCTGTGCTAGAgtctttgttttatattttatccaGCACTGGAAGGTTACTAGGTCCTGTACTCTTGCTGAAGGACACGGAATGGACTGGTTTTGTCCGCGGTGTCACACGGATCAAATTTCTCACAACATGACCAGAACTCGACTTCTTGTCATTTTCTGGGTTCTACTGGAAAGGGGAGATTCAAGATGCTTCCGAAATCCTGCTgCTGGTGAGGACCAGAACTTCTATGATTCAGCGACTCATTGATTTTGTAAAAGCCATACATCCATACCAAACTCCAGAAATCCTCAGTTTTCCCATTCAAGATGGAAGTCAATCCTACTTGAAATGGATAGATGATGCAGTTCCTGATGTATAACCCTATCATTGACCATCATGAAATGAAAGTACATTCCTACTGGTTGGAGAACATTCAGTTCTGGTCTTTATAAGAGGTGCAATATCATGGATAAAGGATTTATGGTCAAGGCTGCAAGGACTGATcgtaattaaataattaataaaacctCACCAAATGGCTGAGTGAATGCAGAGTAGTGCAGTGGAAAAGGCGTTACCTTGTCTTTGTGAGATCACAGatttgaatcctgacaatgtCAGAGCCATATGTGGCCATAAAAGAGAGCTGAATTGGCCCTGCTCATCCAAGCACATTCAGCTGTCCAGTGActttgcatgagcagcagttcaaaaagatgtgtgTGTCTTGAAGGAAGCATGTAAGCATATTACTTATTTCAAGGACCAAAGTTTATATGAGTAAAATTAAGACGTGCACTTACTTGAAGTGAGCTCGCAAGCATAGGAGATAAGTGTGTACTTAACTTTATCATTTAAACTGTAGGTAAACTACTGCAAACCTTTCTTTAAAGTAGAtcacacaattaaaaaaaagtatatacaaatacagagaaacacaccaAACGTAACTAGTTTTCCACTATCCAGCTATCGTTATCTCTTTAGCTAAAGCAGCTTCACATCTGGGTAACAGAACAATTCCACAGCAAGGATAAATCTGATGGCTCTCATTCACTAATTTCTCTAGAGAACAAATGTATGCCTTACTTGTTCAGCAAGAATAATGATAAAACTCCATCACTCCTGAAtctattttccttttatttgattatattgGACTTTTAATCCATCTCTGTCTTGCTCTTTCTCCATTGATTGGCTGACGGCTCTGCCTGTCACTGTGTTATCAGACATCATTCATTCCTAAAGTAGGGACATGATAACATTTGATGTATCCTGCCAGTTGTGACCCAACTCCCCTGACACAGTG
>XM_026922499.2
TCTCGTCCACCTGCCAGTCAGTGAAGTAGCTGTCAACGCTGTAACCGCAAGACTAGTCGTGTCAAGGTTTCGAAAGAAACGACATGTAAACAGCTGTGCTAGAgtctttgttttatattttatccaGCACTGGAAGGTTACTAGGTCCTGTACTCTTGCTGAAGGACACGGAATGGACTGGTTTTGTCCGCGGTGTCACACGGATCAAATTTCTCACAACATGACCAGAACTCGACTTCTTGTCATTTTCTGGACACTGATCCTGACCATGATGCTGTACCCAATGATGTCAATGTTGGCTATTCAGTTGTACACAGCCCTGAGCGGCAGTTACGTTGCTGGACATCATTCTTTATTGCTCATCAACTGTCCTACTGAGCAAACTGCTAAAGATATTGGAAGaaaCATCATGGAGAAAAGGATGGCAGCATGTGTGAATATTCTCCCCCGCACCTCAACCATGTTCTACTGGAAAGGGGAGATTCAAGATGCTTCCGAAATCCTGCTgCTGGTGAGGACCAGAACTTCTATGATTCAGCGACTCATTGATTTTGTAAAAGCCATACATCCATACCAAACTCCAGAAATCCTCAGTTTTCCCATTCAAGATGGAAGTCAATCCTACTTGAAATGGATAGATGATGCAGTTCCTGATGTATAACCCTATCATTGACCATCATGAAATGAAAGTACATTCCTACTGGTTGGAGAACATTCAGTTCTGGTCTTTATAAGAGGTGCAATATCATGGATAAAGGATTTATGGTCAAGGCTGCAAGGACTGATcgtaattaaataattaataaaacctCACCAAATGGCTGAGTGAATGCAGAGTAGTGCAGTGGAAAAGGCGTTACCTTGTCTTTGTGAGATCACAGatttgaatcctgacaatgtCAGAGCCATATGTGGCCATAAAAGAGAGCTGAATTGGCCCTGCTCATCCAAGCACATTCAGCTGTCCAGTGActttgcatgagcagcagttcaaaaagatgtgtgTGTCTTGAAGGAAGCATGTAAGCATATTACTTATTTCAAGGACCAAAGTTTATATGAGTAAAATTAAGACGTGCACTTACTTGAAGTGAGCTCGCAAGCATAGGAGATAAGTGTGTACTTAACTTTATCATTTAAACTGTAGGTAAACTACTGCAAACCTTTCTTTAAAGTAGAtcacacaattaaaaaaaagtatatacaaatacagagaaacacaccaAACGTAACTAGTTTTCCACTATCCAGCTATCGTTATCTCTTTAGCTAAAGCAGCTTCACATCTGGGTAACAGAACAATTCCACAGCAAGGATAAATCTGATGGCTCTCATTCACTAATTTCTCTAGAGAACAAATGTATGCCTTACTTGTTCAGCAAGAATAATGATAAAACTCCATCACTCCTGAA
>XM_034300429.1
TCTCGTCCACCTGCCAGTCAGTGAAGTAGCTGTCAACGCTGTAACCGCAAGACTAGTCGTGTCAAGGTTTCGAAAGAAACGACATGTAAACAGCTGTGCTAGAgtctttgttttatattttatccaGCACTGGAAGGTTACTAGGTCCTGTACTCTTGCTGAAGGACACGGAATGGACTGGTTTTGTCCGCGGTGTCACACGGATCAAATTTCTCACAACATGACCAGAACTCGACTTCTTGTCATTTTCTGGACACTGATCCTGACCATGATGCTGTACCCAATGATGTCAATGTTGGCTATTCAGTTGTACACAGCCCTGAGCGGCAGTTACGTTGCTGGACATCATTCTTTATTGCTCATCAACTGTCCTACTGAGCAAACTGCTAAAGATATTGGAAGaaaCATCATGGAGAAAAGGATGGCAGCATGTGTGAATATTCTCCCCCGCACCTCAACCATGTTCTACTGGAAAGGGGAGATTCAAGATGCTTCCGAAATCCTGCTgCTGGTGAGGACCAGAACTTCTATGATTCAGCGACTCATTGATTTTGTAAATCTGTGTGTTCCTCTAGAGCCATACATCCATACCAAACTCCAGAAATCCTCAGTTTTCCCATTCAAGATGGAAGTCAATCCTACTTGAAATGGATAGATGATGCAGTTCCTGATGTATAACCCTATCATTGACCATCATGAAATGAAAGTACATTCCTACTGGTTGGAGAACATTCAGTTCTGGTCTTTATAAGAGGTGCAATATCATGGATAAAGGATTTATGGTCAAGGCTGCAAGGACTGATcgtaattaaataattaataaaacctCACCAAATGGCTGAGTGAATGCAGAGTAGTGCAGTGGAAAAGGCGTTACCTTGTCTTTGTGAGATCACAGatttgaatcctgacaatgtCAGAGCCATATGTGGCCATAAAAGAGAGCTGAATTGGCCCTGCTCATCCAAGCACATTCAGCTGTCCAGTGActttgcatgagcagcagttcaaaaagatgtgtgTGTCTTGAAGGAAGCATGTAAGCATATTACTTATTTCAAGGACCAAAGTTTATATGAGTAAAATTAAGACGTGCACTTACTTGAAGTGAGCTCGCAAGCATAGGAGATAAGTGTGTACTTAACTTTATCATTTAAACTGTAGGTAAACTACTGCAAACCTTTCTTTAAAGTAGAtcacacaattaaaaaaaagtatatacaaatacagagaaacacaccaAACGTAACTAGTTTTCCACTATCCAGCTATCGTTATCTCTTTAGCTAAAGCAGCTTCACATCTGGGTAACAGAACAATTCCACAGCAAGGATAAATCTGATGGCTCTCATTCACTAATTTCTCTAGAGAACAAATGTATGCCTTACTTGTTCAGCAAGAATAATGATAAAACTCCATCACTCCTGAA

Function

NR:

description
protein CutA homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU457237 False 1355 lncRNA 0.40 4 12790931 12800917
XM_026922499.2 False 1412 mRNA 0.41 6 12790901 12800735
XM_034300429.1 True 1429 mRNA 0.41 6 12790901 12800735

Neighbor

gene id symbol gene type direction distance location
fibcd1 fibcd1,LOC108259714,LOC108428067,LOC107739453,LOC107693814,LOC105015243,LOC103369860,LOC107596897,LOC107700935,LOC106562973 coding upstream 74071 12605281 ~ 12716830 (+)
hexb hexb coding upstream 504777 12269176 ~ 12286124 (+)
LOC113531115 NA coding upstream 526817 12253827 ~ 12264084 (+)
arhgef28a arhgef28 coding upstream 672463 12026060 ~ 12118438 (+)
btf3 btf3,LOC107655933 coding upstream 780679 12002274 ~ 12010222 (+)
ttll11 ttll11,LOC107700937,LOC107596909 coding downstream 195341 12996258 ~ 13020139 (+)
specc1 specc1 coding downstream 400887 13201804 ~ 13272662 (+)
adora2b adora2b,LOC108428193,LOC107665025,LOC107712140 coding downstream 472968 13273885 ~ 13285031 (+)
c27h11orf54 c28h11orf54,cunh11orf54,zgc:85789,LOC107709398,LOC107587676,LOC107690214 coding downstream 716553 13517470 ~ 13522726 (+)
LOC113531575 spata22 coding downstream 722100 13523017 ~ 13631816 (+)
G385624 NA non-coding upstream 71459 12718685 ~ 12719442 (+)
LOC117596213 NA non-coding upstream 163623 12626492 ~ 12627278 (+)
G385594 NA non-coding upstream 242785 12547837 ~ 12548116 (+)
G385588 NA non-coding upstream 320737 12469723 ~ 12470164 (+)
LOC117596248 NA non-coding upstream 387482 12360613 ~ 12403419 (+)
G385698 NA non-coding downstream 442 12801359 ~ 12802002 (+)
G385697 NA non-coding downstream 4111 12805028 ~ 12805853 (+)
G385695 NA non-coding downstream 6406 12807323 ~ 12809012 (+)
G385823 NA non-coding downstream 194128 12995045 ~ 12996216 (+)
G385892 NA non-coding downstream 351075 13151992 ~ 13152207 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other upstream 955857 11718018 ~ 11835044 (+)
ajm1 c28h9orf172 other upstream 1464846 11297974 ~ 11326055 (+)
G384593 NA other upstream 2411236 10378213 ~ 10379665 (+)
G384178 ier5l,LOC108228905 other upstream 3022865 9765740 ~ 9768036 (+)
G383625 LOC108260351 other upstream 4015767 8764902 ~ 8775134 (+)
G386294 NA other downstream 1020871 13821788 ~ 13824055 (+)
G386325 NA other downstream 1024933 13825850 ~ 13828148 (+)
c27h11orf88 c28h11orf88 other downstream 2362467 15163384 ~ 15233692 (+)
sik2a sik2 other downstream 2444088 15245005 ~ 15274079 (+)
zgc:193711 LOC108260397 other downstream 2553443 15354360 ~ 15361054 (+)

Expression


Co-expression Network