G385698


Basic Information

Item Value
gene id G385698
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 12801359 ~ 12802002 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU457239
TTGTGACTATGGTCAGAGCTACAGGTTAGGCTATCCTGCAAATCTGGCAGTAGTCTCTTAAAATAGGCTACAAGTGGTACTAACCTCGCAATTAGATCCCTCAGAAGTATTACGATGTGTAAGAAGGACAAGAGTGTGGTGGGGTGGATTGCTCACATAATCCATGCTCATAATACTGAGTCATGAATGTGGTGGAGTGGTTTGCCTTGCAATCCCACTCTCATAATGCTAAGGGAAGTAACCTAGGCATCTCTCAGCAAGATTTAATGGCATCATGGCAACCTACTCCATTTAGGGATCTTCAGCAACAAAGTTCCCAAATACATTGTCATAACGGAGAGTCCAGGAAGACGGACGCAATATGCAAAACTTCTTTAAAGGggacaaaaactaaacacagTGCAAACAGTAACTAATCTAGCCACAGCCACAAACATAAGCTTACTGCTTCCACAAAAGTAGGGGGAAACATGGGACTTAAATAGGGTGAAATAAtggggaaacacaaaacagttgTGCAGGATTATGACAGGAAAAGGGAGCAGACAACAGAAGTTGTTCTAAACAATGAGTAACCCTCTAGTGGTCTGGGATGGAACTGCCCCTGGTGGCCTGTACATTCTCTTTTCACTCGGTAGATTATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU457239 True 644 lncRNA 0.43 1 12801359 12802002

Neighbor

gene id symbol gene type direction distance location
fibcd1 fibcd1,LOC108259714,LOC108428067,LOC107739453,LOC107693814,LOC105015243,LOC103369860,LOC107596897,LOC107700935,LOC106562973 coding upstream 84529 12605281 ~ 12716830 (+)
hexb hexb coding upstream 515235 12269176 ~ 12286124 (+)
LOC113531115 NA coding upstream 537275 12253827 ~ 12264084 (+)
arhgef28a arhgef28 coding upstream 682921 12026060 ~ 12118438 (+)
btf3 btf3,LOC107655933 coding upstream 791137 12002274 ~ 12010222 (+)
ttll11 ttll11,LOC107700937,LOC107596909 coding downstream 194256 12996258 ~ 13020139 (+)
specc1 specc1 coding downstream 399802 13201804 ~ 13272662 (+)
adora2b adora2b,LOC108428193,LOC107665025,LOC107712140 coding downstream 471883 13273885 ~ 13285031 (+)
c27h11orf54 c28h11orf54,cunh11orf54,zgc:85789,LOC107709398,LOC107587676,LOC107690214 coding downstream 715468 13517470 ~ 13522726 (+)
LOC113531575 spata22 coding downstream 721015 13523017 ~ 13631816 (+)
G385624 NA non-coding upstream 81917 12718685 ~ 12719442 (+)
LOC117596213 NA non-coding upstream 174081 12626492 ~ 12627278 (+)
G385594 NA non-coding upstream 253243 12547837 ~ 12548116 (+)
G385588 NA non-coding upstream 331195 12469723 ~ 12470164 (+)
LOC117596248 NA non-coding upstream 397940 12360613 ~ 12403419 (+)
G385697 NA non-coding downstream 3026 12805028 ~ 12805853 (+)
G385695 NA non-coding downstream 5321 12807323 ~ 12809012 (+)
G385823 NA non-coding downstream 193043 12995045 ~ 12996216 (+)
G385892 NA non-coding downstream 349990 13151992 ~ 13152207 (+)
G386004 NA non-coding downstream 384704 13186706 ~ 13186929 (+)
zgc:63972 LOC108260458 other upstream 442 12790901 ~ 12800917 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other upstream 966315 11718018 ~ 11835044 (+)
ajm1 c28h9orf172 other upstream 1475304 11297974 ~ 11326055 (+)
G384593 NA other upstream 2421694 10378213 ~ 10379665 (+)
G384178 ier5l,LOC108228905 other upstream 3033323 9765740 ~ 9768036 (+)
G386294 NA other downstream 1019786 13821788 ~ 13824055 (+)
G386325 NA other downstream 1023848 13825850 ~ 13828148 (+)
c27h11orf88 c28h11orf88 other downstream 2361382 15163384 ~ 15233692 (+)
sik2a sik2 other downstream 2443003 15245005 ~ 15274079 (+)
zgc:193711 LOC108260397 other downstream 2552358 15354360 ~ 15361054 (+)

Expression


Co-expression Network