G386004


Basic Information

Item Value
gene id G386004
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 13186706 ~ 13186929 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU457591
CTTTAATGGGCCCTGAAGAGGTTCAACATTCGGCTTGGGTTATGACAAGGGCTGctatttttatagaaaaaaaaaaaaaacccaaccacATGCTGGGCTCATAAACATCATGGGGGCTTTACAGCGTTTAAAATAGGCTGAAGCAGCTGGAGCATCCTTTTCCTTTATACATGCCATGTGAACGTGTGGGCCGTGTTACTCGTCTTATGCTGTTTCTGACTACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU457591 True 224 lncRNA 0.43 1 13186706 13186929

Neighbor

gene id symbol gene type direction distance location
ttll11 ttll11,LOC107700937,LOC107596909 coding upstream 166567 12996258 ~ 13020139 (+)
fibcd1 fibcd1,LOC108259714,LOC108428067,LOC107739453,LOC107693814,LOC105015243,LOC103369860,LOC107596897,LOC107700935,LOC106562973 coding upstream 469876 12605281 ~ 12716830 (+)
hexb hexb coding upstream 900582 12269176 ~ 12286124 (+)
LOC113531115 NA coding upstream 922622 12253827 ~ 12264084 (+)
arhgef28a arhgef28 coding upstream 1068268 12026060 ~ 12118438 (+)
specc1 specc1 coding downstream 14875 13201804 ~ 13272662 (+)
adora2b adora2b,LOC108428193,LOC107665025,LOC107712140 coding downstream 86956 13273885 ~ 13285031 (+)
c27h11orf54 c28h11orf54,cunh11orf54,zgc:85789,LOC107709398,LOC107587676,LOC107690214 coding downstream 330541 13517470 ~ 13522726 (+)
LOC113531575 spata22 coding downstream 336088 13523017 ~ 13631816 (+)
LOC113531401 NA coding downstream 508567 13695496 ~ 13703405 (+)
G385892 NA non-coding upstream 34499 13151992 ~ 13152207 (+)
G385823 NA non-coding upstream 190490 12995045 ~ 12996216 (+)
G385695 NA non-coding upstream 377694 12807323 ~ 12809012 (+)
G385697 NA non-coding upstream 380853 12805028 ~ 12805853 (+)
G385698 NA non-coding upstream 384704 12801359 ~ 12802002 (+)
G386015 NA non-coding downstream 26590 13213519 ~ 13213978 (+)
G385998 NA non-coding downstream 100034 13286963 ~ 13288280 (+)
LOC117596226 NA non-coding downstream 164119 13351048 ~ 13363588 (+)
G386136 NA non-coding downstream 290485 13477414 ~ 13477778 (+)
G386147 NA non-coding downstream 320469 13507398 ~ 13508005 (+)
zgc:63972 LOC108260458 other upstream 385789 12790901 ~ 12800917 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other upstream 1351662 11718018 ~ 11835044 (+)
ajm1 c28h9orf172 other upstream 1860651 11297974 ~ 11326055 (+)
G384593 NA other upstream 2807041 10378213 ~ 10379665 (+)
G384178 ier5l,LOC108228905 other upstream 3418670 9765740 ~ 9768036 (+)
G386294 NA other downstream 634859 13821788 ~ 13824055 (+)
G386325 NA other downstream 638921 13825850 ~ 13828148 (+)
c27h11orf88 c28h11orf88 other downstream 1976455 15163384 ~ 15233692 (+)
sik2a sik2 other downstream 2058076 15245005 ~ 15274079 (+)
zgc:193711 LOC108260397 other downstream 2167431 15354360 ~ 15361054 (+)

Expression


Co-expression Network