LOC117596226


Basic Information

Item Value
gene id LOC117596226
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 13351048 ~ 13363588 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU457662
CTGTTCTGACTTATTATAACATACTCTCCATGTCGTATTTCCACTCTTGCTTTATATTCCTCTGTGTGAAGTACAGACTCTCCAGTCCCCCAGACCTCAGATGTTCCCAGCATTTTAGAACTTTTCAGGACAGCACATCCTATCCTTTCAGCATTTTCCTTCTTTCAGGCCATGCCAGCTCCACATGTGGTGAAAATATCTCTCTGCTGCCTGCAAGAGCAATGTTCCCtgcttgttttcattttatggtTGTATACACAATGCTGCCAAAGCCACAGTGAGGAAAAGAGTGGGGAAGAGAAGGGGAGAGATCAATCAGGAATGAAGAAGAGATAGACAAACAAGCCCACTCATGGTATGCAAGAGGAGGACGTGATGCATCAGAGATCTTGCAACGATTAACTGTAAACTGTGAGTTTCCCGTTTGGATGCTTGTAAACTCCATAACTGTAATAAAAGTGATATGTTCCAGTAAAGTAGACTCCAGTCTCAGCAATACTGTAGGACCTGCATTTCTCAGTGAGTGACCTTCTTATGCTGAATGAAAAGCCTGATTCATATAAAGAgccaaagcaaaaacaaacctgTCTGTGGTGGCATAGAGAAAGGAAGTTAATCCTCTGGGCAAAGAAACAGAACTTTCATTAAGTTTGTCCTTTATGTCTTATGACTTGGCAAAAGCATGATATACATTACAAAATGCGACACCACTTCCTCATGCTTGTAGCAGGAATGCACCAATCCccctttttccatttcattacaAGACCCGGCTGATATCTGACACAGACATCCTTTCGGGAGCAAAGCTGACTCTCTGCAATCTTCTAATGTAAAACCTAAGAGGAGAGTTTTAAGACAACGTGTCCCCGTGTTCATGTGCAAGATCTTTCTTGCTTCAGTCAATATAAAAACCTGATCAGATGAGAAGTCAAACCTGATCTGATTTGACAACAATCAAGGATTTgttgatatatattatatactatggTGAAAAAATTTAGGACTGTCTTATATGGTACCATATTGTAACCAATATTAAAGGCAGcaaggaaaaatataatattccacatacactttttttaaaacatatttacagattCGCAGCTTTATGGCATCAAACACTGCTTACTTTCCAACACTGAATCACTAGTTGATATCCTTCTGAATATCAGCCCACTTTCCAAAAATTATTTTAGCATGATATACTCATGCCAACTGATATATTGATTAGTTCacagaattttaaatttttaacaaaactgaaGCAACAATGGGAAAGCAAACTTAACTCACAATTTTCAGAGGAAATATGGCAAGGTATTATAAATAAGATTCACGCATCCTCAATTAGTTTACGAGATACATTGATTCAATTTAAAGTAGTCCTTCTGCCTTCActggaaaaaagcaaaattagtaaaaaattTTCCTTGTATGATAGGTGTGGAGTTGGAATAATCGTTAATCATATACATGCATGTTTCTTATCCAAAACCTGTTAACTACTGgcaattaatatttaattttctctcaGGAGGTCTGCATATATCCATTAATCCTTCCCTATTCTAGGGATATTTGGTTTAACTACACCAGAACTCTTAGATTACTAagctaaaaatatgaatttaaactgaattttttttgctgtttgaggtttttcttctttcttcctcgTTCTCATTTAATACTATACCTGGCTTTGTGAGGCCAAAATTATgttatagaatagaatattttattctattactcttactttagttcattttttttactcctctCTCAGAAATCCTTTCATCTGGTTTT
>XR_004577393.1
ACCGCAGCCACTGAGCTGATGAGTGGAAAAAGGattgagagagtgaaagaacaGGAGAAATAACAGCAGGATAAAAGCTGGAGGAAGGAAATCTGCTTCCGTCTCCTCACATTTACCGGACGCTAGCATaagaaaggaacaaaacacGACGTCAAGATCGTATACAGAGGTATGCAAGAGGAGGACGTGATGCATCAGAGATCTTGCAACGATTAACTGTAAACTGTGAGTTTCCCGTTTGGATGCTTGTAAACTCCATAACTGTAATAAAAGTGATATGTTCCAGTAAAGTAGACTCCAGTCTCAGCAATACTGTAGGACCTGCATTTCTCAGTGAGTGACC
>XR_004577394.1
AAAGGattgagagagtgaaagaacaGGAGAAATAACAGCAGGATAAAAGCTGGAGGAAGGGCCATGCCAGCTCCACATGTGGTGAAAATATCTCTCTGCTGCCTGCAAGAGCAATGTTCCCtgcttgttttcattttatggtTGTATACACAATGCTGCCAAAGCCACAGTGAGGAAAAGAGTGGGGAAGAGAAGGGGAGAGATCAATCAGGAATGAAGAAGAGATAGACAAACAAGCCCACTCATGGTATGCAAGAGGAGGACGTGATGCATCAGAGATCTTGCAACGATTAACTGTAAACTGTGAGTTTCCCGTTTGGATGCTTGTAAACTCCATAACTGTAATAAAAGTGATATGTTCCAGTAAAGTAGACTCCAGTCTCAGCAATACTGTAGGACCTGCATTTCTCAGTGAGTGACC

Function

GO:

id name namespace
GO:0050878 regulation of body fluid levels biological_process
GO:0051180 vitamin transport biological_process
GO:0001775 cell activation biological_process
GO:0030168 platelet activation biological_process
GO:0009611 response to wounding biological_process
GO:0007596 blood coagulation biological_process
GO:0007599 hemostasis biological_process
GO:0050817 coagulation biological_process
GO:0042060 wound healing biological_process
GO:0005520 insulin-like growth factor binding molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
TU457662 True 1809 lncRNA 0.36 2 13361565 13363588
XR_004577393.1 False 343 lncRNA 0.44 3 13351048 13362308
XR_004577394.1 False 421 lncRNA 0.44 3 13351076 13362308

Neighbor

gene id symbol gene type direction distance location
adora2b adora2b,LOC108428193,LOC107665025,LOC107712140 coding upstream 66017 13273885 ~ 13285031 (+)
specc1 specc1 coding upstream 78386 13201804 ~ 13272662 (+)
ttll11 ttll11,LOC107700937,LOC107596909 coding upstream 330909 12996258 ~ 13020139 (+)
fibcd1 fibcd1,LOC108259714,LOC108428067,LOC107739453,LOC107693814,LOC105015243,LOC103369860,LOC107596897,LOC107700935,LOC106562973 coding upstream 634218 12605281 ~ 12716830 (+)
hexb hexb coding upstream 1064924 12269176 ~ 12286124 (+)
c27h11orf54 c28h11orf54,cunh11orf54,zgc:85789,LOC107709398,LOC107587676,LOC107690214 coding downstream 153882 13517470 ~ 13522726 (+)
LOC113531575 spata22 coding downstream 159429 13523017 ~ 13631816 (+)
LOC113531401 NA coding downstream 331908 13695496 ~ 13703405 (+)
napaa snaa,napaa,LOC108428316,LOC103043684,LOC107740516,LOC107587681,LOC107681892 coding downstream 344069 13707657 ~ 13713231 (+)
im:7138535 LOC108259897 coding downstream 380998 13744586 ~ 13751823 (+)
G385998 NA non-coding upstream 62768 13286963 ~ 13288280 (+)
G386015 NA non-coding upstream 137070 13213519 ~ 13213978 (+)
G386004 NA non-coding upstream 164119 13186706 ~ 13186929 (+)
G385892 NA non-coding upstream 198841 13151992 ~ 13152207 (+)
G385823 NA non-coding upstream 354832 12995045 ~ 12996216 (+)
G386136 NA non-coding downstream 113826 13477414 ~ 13477778 (+)
G386147 NA non-coding downstream 143810 13507398 ~ 13508005 (+)
G386246 NA non-coding downstream 291420 13655008 ~ 13658088 (+)
G386265 NA non-coding downstream 323675 13687263 ~ 13779139 (+)
G386284 NA non-coding downstream 364599 13728187 ~ 13737685 (+)
zgc:63972 LOC108260458 other upstream 550131 12790901 ~ 12800917 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other upstream 1516004 11718018 ~ 11835044 (+)
ajm1 c28h9orf172 other upstream 2024993 11297974 ~ 11326055 (+)
G384593 NA other upstream 2971383 10378213 ~ 10379665 (+)
G384178 ier5l,LOC108228905 other upstream 3583012 9765740 ~ 9768036 (+)
G386294 NA other downstream 458200 13821788 ~ 13824055 (+)
G386325 NA other downstream 462262 13825850 ~ 13828148 (+)
c27h11orf88 c28h11orf88 other downstream 1799796 15163384 ~ 15233692 (+)
sik2a sik2 other downstream 1881417 15245005 ~ 15274079 (+)
zgc:193711 LOC108260397 other downstream 1990772 15354360 ~ 15361054 (+)

Expression


Co-expression Network