G386294


Basic Information

Item Value
gene id G386294
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 13821788 ~ 13824055 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU457909
ACTGGGAACTgccatgtgtgcgtgtgtgtgtgtgtgagacgaaATATTGCTCCAAGCAAATACATCTCAATCCTTCAGTTTAAACTTAAAtgttaaagactttttttttttttttttttccccttagagTATAAACAAGAGGATCCAGGCCTCAAGGCTGGGAAGAAGGCTAcaccacattttaaaaatagatctACTCCTTATGTGGAAAGCTTGTAGAACTGAACTCATTCCCATATTTAATCTCTAGATACTGAGCAAATACTTTCACGTTTCCATTTTAtgccacagcgctgctgaattctcaaatgtgattggacagaaggggtgatattctataacagcagtataGACAGCGAATCACGTTGATATGAAtccactcgttctaatacgttatcgcttatatattaaattacacATGGACTTGTGTGACGTTTTCTATGCAGAGATGTTTAGTTAgaattttggaaggagtttccagtatTAGCACTTTAACACTCAGAGGCAAAGCTGTTCCTTGAtatttctggtttctcagtaatgtaACAagctatatttttgttttattaacttcaatagacagaaccaaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaaaaactacaggtGAGACAGATGGGTGCTCAATCAGGATTTTTATAATGCCCAAGAAACTATGCAGATTTGGCATCTATAGAGGGGAAAAggggggagaaagaaaaagaaaaaaaaaaaaaaaaaacaaaaaaacagcaacaaataaaaatctaataaaatgatCCCATCCATGACATCATTCTGGACACCTCACACCATCATTTGGCCATTATATACAAAGGAATTTGTGGTAAGATGTGCAGATTAGTCCATAATTtttacacaacattacatgaaatgtaatataaagCTTTGTCAGAGCATAGGTTAATACTCGTCTCTACCCTGTAGAGGGCAAACttggacaacaacaacaacaaaaaaaaaaacctccagtcCTTCAGCATGCATGTTCAGACTAGAATATGGTGTttttactaagaaaaaaaaaattcctacaCAGGCACAACTCATATACTCTAGTCATTTCCAGTGGTGTTAATACAGCAACAAGTGACCTGCTGTGATTAATGCTATTAAATCTAAGTGAAGTCAAAAACGTCCTATATTCACGACTGACCACTAGTGGAATGTGGGTTGAATAAGGCCACATATACAGGAGGACAGCAAgaataatattcaaatatgaataaatgttactTCAATATACCTTTAATAATCTAAATCCTGGAGAGACTGACaaacaggacagaaaaaaaaaaaaaaaccctgaatttttttttacattgcgTTCTATAGCCAATCTGCTTTGCCAAAGAAACCTACATAAAACCAAACCCTTGTATTGGGAAATAAGTGAATTTTcaaacaattattattacacactggGCGATACAGTTGCAGTTACAGTACGTTCCGCATCTATGCCCAAGAGCACGATCACTCATAAGCCTTTCACTCAGCATCAGTCACTGAAAAAGAGCTCCGAGCCCTTTATTTATGAGTTCAATTATTCTCCTAAGGCATCTTCTTCCAGGAGCTTTGTAAGAGTTTCACCTCAGTAACTTTGGAGTTTTCTCTAAAAACACTTACAAggctttttcttccttttcttcagaCACTTTCatgcagagcaaaaaaaaatgtttttaaaaaaaaaaaaaaaaacctgaaaagaaaaaggagaatgGAGAGGAAGCAATGTCAGTGAAGGTGTGAACAGTGTAGCTTCCAGGCCTTGGTGAAGTTACGAATGCTCATCGTGATTGGCAGAACTGGCCACTGCGTCACACTCTGAAGCTCTCTCCTTTCCCGTCGATGTGGCGCAGACGCAGGTAGACGTCGGTGCCAATTCCCTGCATCGACTGGACGGACAGCGAGCCGCCCAGATATTCGGCGTACGCCCTCGAGGTGGGCAGACCAAAACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU457909 True 1989 TUCP 0.37 2 13821788 13824055

Neighbor

gene id symbol gene type direction distance location
pex12 pex12 coding upstream 11234 13806887 ~ 13810554 (+)
LOC113531586 gas2l2 coding upstream 57703 13751910 ~ 13764085 (+)
im:7138535 LOC108259897 coding upstream 69965 13744586 ~ 13751823 (+)
napaa snaa,napaa,LOC108428316,LOC103043684,LOC107740516,LOC107587681,LOC107681892 coding upstream 108557 13707657 ~ 13713231 (+)
LOC113531401 NA coding upstream 118383 13695496 ~ 13703405 (+)
ncf1 ncf1 coding downstream 46596 13870651 ~ 13874909 (+)
rcc1l rcc1l,wbscr16,LOC107587689,LOC107710726,LOC107712126,LOC107681900 coding downstream 52780 13876835 ~ 13889267 (+)
rad51d rad51d coding downstream 262587 14086642 ~ 14093355 (+)
nup88 nup88,LOC107709758,LOC107664301,LOC107600765 coding downstream 924383 14748438 ~ 14756063 (+)
mis12 mis12 coding downstream 968078 14792133 ~ 14795940 (+)
G386265 NA non-coding upstream 42649 13687263 ~ 13779139 (+)
G386284 NA non-coding upstream 84103 13728187 ~ 13737685 (+)
G386246 NA non-coding upstream 163700 13655008 ~ 13658088 (+)
G386147 NA non-coding upstream 313783 13507398 ~ 13508005 (+)
G386136 NA non-coding upstream 344010 13477414 ~ 13477778 (+)
G386330 NA non-coding downstream 18288 13842343 ~ 13842646 (+)
G386342 NA non-coding downstream 30803 13854858 ~ 13855094 (+)
G386348 NA non-coding downstream 51883 13875938 ~ 13876193 (+)
G386350 NA non-coding downstream 66948 13891003 ~ 13892625 (+)
LOC117596231 NA non-coding downstream 77929 13901984 ~ 13903993 (+)
zgc:63972 LOC108260458 other upstream 1020871 12790901 ~ 12800917 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other upstream 1986744 11718018 ~ 11835044 (+)
ajm1 c28h9orf172 other upstream 2495733 11297974 ~ 11326055 (+)
G384593 NA other upstream 3442123 10378213 ~ 10379665 (+)
G384178 ier5l,LOC108228905 other upstream 4053752 9765740 ~ 9768036 (+)
G386325 NA other downstream 1795 13825850 ~ 13828148 (+)
c27h11orf88 c28h11orf88 other downstream 1339329 15163384 ~ 15233692 (+)
sik2a sik2 other downstream 1420950 15245005 ~ 15274079 (+)
zgc:193711 LOC108260397 other downstream 1530305 15354360 ~ 15361054 (+)
fkbp6 fkbp6 other downstream 1537303 15361358 ~ 15367247 (+)

Expression


Co-expression Network