G386325


Basic Information

Item Value
gene id G386325
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 13825850 ~ 13828148 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU457943
GTTTGTATCCGTAATTCCGTAAAAAACTGGTGTAATGCTTGCTCACCCGTGCATGGGGCCTGACTGAGGGCCGCTGTTGGTTATGGTGTCGAAGAGGTTGCTCATGCGCGGGTCCTGCGTGCTCTGCTCGGCCGTGCTGAAGTGGTAGTCCATCACTTTATCCATGATGCTGTGGGGAATGCCTCCGCCCCGATCCGAGATCCTGCACAAGAACACGGCAAATCAGGGTCGCCTCTGGACTCTTATCCACAAGGCGAAAGGGGACCGATTCAAAGAGGTTTAATGAATTTCTCTAAACGCAAAGTATTCCCATAAATGCAGTAAAGCTCATAGTTAAACCCCAGGTAGATGTATGGGACCAGGAAGAGGTGGACATTATGCTTGATCGCTACAGTAGTGCAATAAGTGCTTAAAATGCTGACTAGGTCATGGTAAGACAAATACTCCTTGTGTGTACTGGGTAAATTTTTCCACACATACAAACAGCACTCAACACGGCTTGCCAGTGGCCGTGCAACTCGAGTTAATGGACTTCTTTCTCCATAACGACTGCACTCTGCTTCTCTGCCCTCAAACAAGCACTTAAAAAGATAGATAATGGCTTCAATCCTCAGAAGCGTCGTGCTGGGTCGTCAGGAAAATACATTAGTTCAGGTGTACTGGACAACAACGCTGAAAACCAAGCATCTAAAGCATTTCATTAAGCTTCCCCAATGCTCTACCCAAGCAAACGGAGTCAGACAGGTCTTCTCCCaaatactgtttttgtttgatcGATTAGCAAGAGTAACTGAGCAAAGCTCAgaacagaaaaatgcagctAACCTGAATGGTTTCTATACACGCACTTACTCACCTGATGACAAAGTCAGTATCATTGTTGGCGATGGTAACCACCACATCTGGCACGTTGTAAGGAGTGTCCAAGTGGCTCTCCATTGTGGCCCTATAAAAGGACAAACAGATTTTACAAGGATTAAATGAAGCATAAACACCATTATGGTTGAGCCATGATGCTTGTGTTAAAGACCAAGACTTTACTAGGACATTATACATGCGCAAAACAATATTACAGAACAGGAAGATGGTATTGTTTAGAACAGTGTGTTCAAATACATGGCTTAGTGATTACCTATGCCTTGTAGGGGCtttcaaaaacaatgaaaaaaaaaaaaaaataaacaggaaatggcACAGTAGCTGTATTATATTGCCGAGACACCACCTATGCAGTCAAATGTTGCCTGAAGATATTTGCAGAgatggacaaatcactagcctAGCCACCTGGGACAAGCCGATctaactttgtttttttttttttaattcattgttgCCCCACAGACAAGCTGACAGCGCAATAACCCTATTCCCATTTCCCTTGATCTATATTAATGCatataactagctaactagcttggcATACATTCCTCCGTTACGTTAACTTCCGCTTTTCAGCCAAGTCCATTAGATTTCTCGGCAACCAAAAACACGagactgggcagcacattggacatgcctggtgggctagctaatggaTTTCTTATTTGTCCACCACTGTATGAAATGTAATTccaagaaatataaaaataaaccacCACCCAAAATGGATTTGGAGTTCCATCACCTAAAGATGTGTTTGTACGAAGTGTGAAAATGCATCTATTGGTAAAGGAATGATTCAATAACTGGTGATGCTTTGGATGAAGATTCTGACGTTTGGTTGGAAACATCTATTGTGAACACAGACATCACTGAGAGATTCTTCTTCTCTAATCAACCACTATTTTCTTTTAAGGTTTCTGTATTCTAATGTGTCAGCTGTTTTCTggcctagttttttttttttttttttaaataaggacTTGTTTGTTCCAACATGATGACCAGGACATTCCCACTCAGCAGGACAACGTTCCAAGACACTCCTCCCTCTTCTTCCCGTCTCCCACACTCCACTCATGTGACATCTATTCTCCTACAAGTCACTCAGCActgatcttcagtaactgctttatcctggtcagggttgtagtgGATCCAGAGCAAATCCCAGTAACACTGGGAGAAAGGTGGAAGAATCCATCCCAGATTAAGGGCTCTGTAAGGGTATTTTCCCAGTACTGGGGATTAGAGAGGTAAGAAAGAGCCAAGAATAGGTTCCTGTTGGTCCAAAAATCAGTAGTGTGCCTCAAGAATAATATTAATGCAGATGAGGAAATTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU457943 True 2226 TUCP 0.42 2 13825850 13828148

Neighbor

gene id symbol gene type direction distance location
pex12 pex12 coding upstream 15296 13806887 ~ 13810554 (+)
LOC113531586 gas2l2 coding upstream 61765 13751910 ~ 13764085 (+)
im:7138535 LOC108259897 coding upstream 74027 13744586 ~ 13751823 (+)
napaa snaa,napaa,LOC108428316,LOC103043684,LOC107740516,LOC107587681,LOC107681892 coding upstream 112619 13707657 ~ 13713231 (+)
LOC113531401 NA coding upstream 122445 13695496 ~ 13703405 (+)
ncf1 ncf1 coding downstream 42503 13870651 ~ 13874909 (+)
rcc1l rcc1l,wbscr16,LOC107587689,LOC107710726,LOC107712126,LOC107681900 coding downstream 48687 13876835 ~ 13889267 (+)
rad51d rad51d coding downstream 258494 14086642 ~ 14093355 (+)
nup88 nup88,LOC107709758,LOC107664301,LOC107600765 coding downstream 920290 14748438 ~ 14756063 (+)
mis12 mis12 coding downstream 963985 14792133 ~ 14795940 (+)
G386265 NA non-coding upstream 46711 13687263 ~ 13779139 (+)
G386284 NA non-coding upstream 88165 13728187 ~ 13737685 (+)
G386246 NA non-coding upstream 167762 13655008 ~ 13658088 (+)
G386147 NA non-coding upstream 317845 13507398 ~ 13508005 (+)
G386136 NA non-coding upstream 348072 13477414 ~ 13477778 (+)
G386330 NA non-coding downstream 14195 13842343 ~ 13842646 (+)
G386342 NA non-coding downstream 26710 13854858 ~ 13855094 (+)
G386348 NA non-coding downstream 47790 13875938 ~ 13876193 (+)
G386350 NA non-coding downstream 62855 13891003 ~ 13892625 (+)
LOC117596231 NA non-coding downstream 73836 13901984 ~ 13903993 (+)
G386294 NA other upstream 1795 13821788 ~ 13824055 (+)
zgc:63972 LOC108260458 other upstream 1024933 12790901 ~ 12800917 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other upstream 1990806 11718018 ~ 11835044 (+)
ajm1 c28h9orf172 other upstream 2499795 11297974 ~ 11326055 (+)
G384593 NA other upstream 3446185 10378213 ~ 10379665 (+)
c27h11orf88 c28h11orf88 other downstream 1335236 15163384 ~ 15233692 (+)
sik2a sik2 other downstream 1416857 15245005 ~ 15274079 (+)
zgc:193711 LOC108260397 other downstream 1526212 15354360 ~ 15361054 (+)
fkbp6 fkbp6 other downstream 1533210 15361358 ~ 15367247 (+)
LOC113531170 nyap1,LOC108259934,LOC101885998,LOC107596102 other downstream 1979401 15807549 ~ 15859905 (+)

Expression


Co-expression Network