G386375


Basic Information

Item Value
gene id G386375
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 13944268 ~ 13944481 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU458014
aaaaaaaaatggccaaaaaataAAGTCATTCTTAGACTGCTGTCCAGGGGTGGGTGAATCTTCAGCTTtcaaaatgttatataatgcTCCTCAAAGACGTTATATAAACTTATTTATACATTGCTCAGAACCAGAAATAAGGCTTTGCTGTGTAACAAAAGCAAATCAACTATTGTACTTAACTATTGAGCAAGCTACTTGTTCTAAATCCCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU458014 True 214 lncRNA 0.34 1 13944268 13944481

Neighbor

gene id symbol gene type direction distance location
rcc1l rcc1l,wbscr16,LOC107587689,LOC107710726,LOC107712126,LOC107681900 coding upstream 55001 13876835 ~ 13889267 (+)
ncf1 ncf1 coding upstream 69359 13870651 ~ 13874909 (+)
pex12 pex12 coding upstream 133714 13806887 ~ 13810554 (+)
LOC113531586 gas2l2 coding upstream 180183 13751910 ~ 13764085 (+)
im:7138535 LOC108259897 coding upstream 192445 13744586 ~ 13751823 (+)
rad51d rad51d coding downstream 142161 14086642 ~ 14093355 (+)
nup88 nup88,LOC107709758,LOC107664301,LOC107600765 coding downstream 803957 14748438 ~ 14756063 (+)
mis12 mis12 coding downstream 847652 14792133 ~ 14795940 (+)
mcama LOC108260060 coding downstream 866621 14811102 ~ 14855941 (+)
tlcd5b tmem136,LOC108260061,LOC108428603 coding downstream 914076 14858557 ~ 14860744 (+)
G386374 NA non-coding upstream 329 13943709 ~ 13943939 (+)
G386361 NA non-coding upstream 17676 13926388 ~ 13926592 (+)
G386359 NA non-coding upstream 20025 13923820 ~ 13924243 (+)
LOC117596231 NA non-coding upstream 40275 13901984 ~ 13903993 (+)
G386350 NA non-coding upstream 51643 13891003 ~ 13892625 (+)
G386382 NA non-coding downstream 13663 13958144 ~ 13958346 (+)
G386386 NA non-coding downstream 16932 13961413 ~ 13961709 (+)
G386416 NA non-coding downstream 44075 13988556 ~ 13989316 (+)
G386457 NA non-coding downstream 88354 14032835 ~ 14033241 (+)
G386462 NA non-coding downstream 93202 14037683 ~ 14037922 (+)
G386325 NA other upstream 116120 13825850 ~ 13828148 (+)
G386294 NA other upstream 120213 13821788 ~ 13824055 (+)
zgc:63972 LOC108260458 other upstream 1143351 12790901 ~ 12800917 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other upstream 2109224 11718018 ~ 11835044 (+)
ajm1 c28h9orf172 other upstream 2618213 11297974 ~ 11326055 (+)
c27h11orf88 c28h11orf88 other downstream 1218903 15163384 ~ 15233692 (+)
sik2a sik2 other downstream 1300524 15245005 ~ 15274079 (+)
zgc:193711 LOC108260397 other downstream 1409879 15354360 ~ 15361054 (+)
fkbp6 fkbp6 other downstream 1416877 15361358 ~ 15367247 (+)
LOC113531170 nyap1,LOC108259934,LOC101885998,LOC107596102 other downstream 1863068 15807549 ~ 15859905 (+)

Expression


Co-expression Network