G386416


Basic Information

Item Value
gene id G386416
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 13988556 ~ 13989316 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU458055
TGGAGTCGTCCGAGTCGTAGCCCTCCATGTCGGGCTCTTCCTCCTTCCTGCTGGGTGGAGGCAGGGCGGAGGCGGAGGCAGAGGCGGAGGCGGCGCTGAAGGCCCGGTCCAGGTCGTCATCGTTGTCGTTCTTTTCTCGGCCCGTTTCGGTGGCTGAGGAGGCGGTGGCCGGGGCGGAGgacgaggatgaggaggaagagcgCTGCGAGCCGGCGCGCCTCAGGACCGGGGCTGCTGTGGGAGGGAAACCCCGCGGGTAGCGGGGGAAATAGTCAGAGATCTGCTTGATGGGCTGGATGGGGCCCGGGCACACATCAATAGCCATGTGCTCCTGGATGCTGATGGTGGGCTTTTCGCCTCGGCGCTGTGTCATGCATGCGGCCGTGCGGGCGACGCCCCCCAGGAGGCGGGGCGGGTGTAGAGATCGGCAAACGACTCAAGGAAAAgtcaggaattttttttctaaaaaaaacttacaaaaaatGTCCACCTTGCTTGTCTACCTAGCTTCTAAAGGTCTCCAAGTGTAAAGTACGCCCCTGAAGAAAGGAAAACGAAAAGCCCTGATGAGATGGAGCACGATGCTGTGGGTGCccgggtgagtgtgtgtgtgtgtgtgtaagtgtgtgtgtgtgtgagatgagagTAAGCAGTTGCAACTACATGGAGAGTGCCAGCGGAGTGGTACTGCAAGCTGTAAGCATGCCGTCTGCCTCAGAGCTCTGCTCAAAGCGCTACAAAATGCACTGAGGCTGTCCAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU458055 True 761 lncRNA 0.59 1 13988556 13989316

Neighbor

gene id symbol gene type direction distance location
rcc1l rcc1l,wbscr16,LOC107587689,LOC107710726,LOC107712126,LOC107681900 coding upstream 99289 13876835 ~ 13889267 (+)
ncf1 ncf1 coding upstream 113647 13870651 ~ 13874909 (+)
pex12 pex12 coding upstream 178002 13806887 ~ 13810554 (+)
LOC113531586 gas2l2 coding upstream 224471 13751910 ~ 13764085 (+)
im:7138535 LOC108259897 coding upstream 236733 13744586 ~ 13751823 (+)
rad51d rad51d coding downstream 97326 14086642 ~ 14093355 (+)
nup88 nup88,LOC107709758,LOC107664301,LOC107600765 coding downstream 759122 14748438 ~ 14756063 (+)
mis12 mis12 coding downstream 802817 14792133 ~ 14795940 (+)
mcama LOC108260060 coding downstream 821786 14811102 ~ 14855941 (+)
tlcd5b tmem136,LOC108260061,LOC108428603 coding downstream 869241 14858557 ~ 14860744 (+)
G386386 NA non-coding upstream 26847 13961413 ~ 13961709 (+)
G386382 NA non-coding upstream 30210 13958144 ~ 13958346 (+)
G386375 NA non-coding upstream 44075 13944268 ~ 13944481 (+)
G386374 NA non-coding upstream 44617 13943709 ~ 13943939 (+)
G386361 NA non-coding upstream 61964 13926388 ~ 13926592 (+)
G386457 NA non-coding downstream 43519 14032835 ~ 14033241 (+)
G386462 NA non-coding downstream 48367 14037683 ~ 14037922 (+)
G386476 NA non-coding downstream 68912 14058228 ~ 14058503 (+)
G386458 NA non-coding downstream 83932 14073248 ~ 14076060 (+)
G386490 NA non-coding downstream 140855 14130171 ~ 14130627 (+)
G386325 NA other upstream 160408 13825850 ~ 13828148 (+)
G386294 NA other upstream 164501 13821788 ~ 13824055 (+)
zgc:63972 LOC108260458 other upstream 1187639 12790901 ~ 12800917 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other upstream 2153512 11718018 ~ 11835044 (+)
ajm1 c28h9orf172 other upstream 2662501 11297974 ~ 11326055 (+)
c27h11orf88 c28h11orf88 other downstream 1174068 15163384 ~ 15233692 (+)
sik2a sik2 other downstream 1255689 15245005 ~ 15274079 (+)
zgc:193711 LOC108260397 other downstream 1365044 15354360 ~ 15361054 (+)
fkbp6 fkbp6 other downstream 1372042 15361358 ~ 15367247 (+)
LOC113531170 nyap1,LOC108259934,LOC101885998,LOC107596102 other downstream 1818233 15807549 ~ 15859905 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00005401 doc2b,LOC107681901,LOC107685552 coding CM030142.1 CM030142.1 148035 ~ 151114 (-)