G386457


Basic Information

Item Value
gene id G386457
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 14032835 ~ 14033241 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU458096
AATTTACAATGTAAGAGCCACAGGCTATGTGGAAGAGAGATAAGCTGGGTTAAGTGtttatatgagtgtgtgtctgtgtgtgtgtgtgtgattactcaCACAATGATGTGCGGCCCTGGTCTGTGTCTTCATCCTCCGGGGCGGGGGCCAGGCTGCTGCGCTCGCTGCCTAGACTGGAATGGCTCTCTGACAGGAAGCTGGCTCGGGATGGGCTGCTCAGGATGGACTGCAGGGGCGTGAGAGCCACGCTCCCACTCGACTCGGACAGAGCTGATCAGGATGAAGGAGGAAATATGGATCGATTTCGAATAGTTAGATAAGATTTCCTGACATATGCAtacaacataaaacacacaggtCTAGGCAGGAGCTATTGGAGCAGGCTTGTAGAGTTACCCGAGTTTCGT

Function

GO: NA

KEGG:

id description
ko04151 PI3K-Akt signaling pathway
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko04974 Protein digestion and absorption
ko05165 Human papillomavirus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU458096 True 407 lncRNA 0.51 1 14032835 14033241

Neighbor

gene id symbol gene type direction distance location
rcc1l rcc1l,wbscr16,LOC107587689,LOC107710726,LOC107712126,LOC107681900 coding upstream 143568 13876835 ~ 13889267 (+)
ncf1 ncf1 coding upstream 157926 13870651 ~ 13874909 (+)
pex12 pex12 coding upstream 222281 13806887 ~ 13810554 (+)
LOC113531586 gas2l2 coding upstream 268750 13751910 ~ 13764085 (+)
im:7138535 LOC108259897 coding upstream 281012 13744586 ~ 13751823 (+)
rad51d rad51d coding downstream 53401 14086642 ~ 14093355 (+)
nup88 nup88,LOC107709758,LOC107664301,LOC107600765 coding downstream 715197 14748438 ~ 14756063 (+)
mis12 mis12 coding downstream 758892 14792133 ~ 14795940 (+)
mcama LOC108260060 coding downstream 777861 14811102 ~ 14855941 (+)
tlcd5b tmem136,LOC108260061,LOC108428603 coding downstream 825316 14858557 ~ 14860744 (+)
G386416 NA non-coding upstream 43519 13988556 ~ 13989316 (+)
G386386 NA non-coding upstream 71126 13961413 ~ 13961709 (+)
G386382 NA non-coding upstream 74489 13958144 ~ 13958346 (+)
G386375 NA non-coding upstream 88354 13944268 ~ 13944481 (+)
G386374 NA non-coding upstream 88896 13943709 ~ 13943939 (+)
G386462 NA non-coding downstream 4442 14037683 ~ 14037922 (+)
G386476 NA non-coding downstream 24987 14058228 ~ 14058503 (+)
G386458 NA non-coding downstream 40007 14073248 ~ 14076060 (+)
G386490 NA non-coding downstream 96930 14130171 ~ 14130627 (+)
LOC117596237 NA non-coding downstream 118903 14152144 ~ 14184051 (+)
G386325 NA other upstream 204687 13825850 ~ 13828148 (+)
G386294 NA other upstream 208780 13821788 ~ 13824055 (+)
zgc:63972 LOC108260458 other upstream 1231918 12790901 ~ 12800917 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other upstream 2197791 11718018 ~ 11835044 (+)
ajm1 c28h9orf172 other upstream 2706780 11297974 ~ 11326055 (+)
c27h11orf88 c28h11orf88 other downstream 1130143 15163384 ~ 15233692 (+)
sik2a sik2 other downstream 1211764 15245005 ~ 15274079 (+)
zgc:193711 LOC108260397 other downstream 1321119 15354360 ~ 15361054 (+)
fkbp6 fkbp6 other downstream 1328117 15361358 ~ 15367247 (+)
LOC113531170 nyap1,LOC108259934,LOC101885998,LOC107596102 other downstream 1774308 15807549 ~ 15859905 (+)

Expression


Co-expression Network