G386458


Basic Information

Item Value
gene id G386458
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 14073248 ~ 14076060 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU458097
tagcGAAGCATGTGCCTATAGTCATTTACAAACAGCACAGAAACAAAGGGATTGTCTTCTAAGGGACTGGTCAGCAGGTAGGACATTTACAATCATGCATTAAGACATGTGAAAGGATTGCAAATGGCATCACACACTTCTGAATAGCAACTTATGTTAAGGGCATAAAGATAGAATTGAAACTAGAGAattgtgtaatgaaataattttcacTCAAAGAAAACAAGGGGACAGATCAAtatgatccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggcaacattCAGAAAATCCATTACACATTTCAAGAAAATATccaacaaaataattttatcctccactttttttttttttaaaacagctttTCTAAACTACTCTACTTTTTTTTGGATTCGCATTAAAATTGATTCGAATTAAAAACTCAGgtttccatcatcatcatcatcatcatcatcataaaactgagaaatgtatttatataagcAACAAGTAATAAAAGATGCTTTAAATATGAAGTATTGCTTTTCTGAAACACATCCTTTGTATAGCATAATTAATCTTAACTAAACTGGTGAACTGATGTTTGGGGTTTAACACTAAATTATGGCTAAAGATGAAATCATTTGACctgctatttatttataagtgaAATGTTGCTCAGTTCAGTTGTGGAGTTTGTCTGGTGTTTTGAGTGAGGCGTGATATTTACATGGATGATTAGTGCAAAGGCACGTTAGTGGTTGGACAGCGTGTGTTGGGGAACGGCTAGCGAAAGAGACAAGATAAAAATGGTTGCTTGTGTCGGATGAGCCTAATATATTATTAAAAAAAAGCAACGGCAAAATCAGAAACACGTCAACATTAACTCAAAATGGTTCCTCGTTCTTCACatgcttgttgctgattggacaCAGCATATGCGTATGACTACTtctattaagaagaaaataaaagaattgcaCTTTTTCAAACTGTTATCCAGTTactctagcaaaaaaaaaaattaatttgaaattaCTTATGTTACAATACTAAAGAATAATTCTTTCTTCTGAAAAACGTGGCTTCCTTTAGGTGAGATTTTCAGCATACTCATATAATGCCATGCAAAGATaacagcatatttaaaaaaaagcatatgaaTGCCTTTgataaaattaaacatgaataaacGCATCAAGTAAGATTCATTTAGGTTCATATTTTCCTCTTACTCTTTCCGGGTTTATCAGACCGATGAGCCAATTATTGTTGATATGTTTCTGATTTGTTGTGTTATTGGCTTTGCTGTTGTGATTTCTGATTTGCTgctgcattgttttttgtttttttttttgttaatgcatTTGCACTTACAGGCCACCACCCTGGTGCTTTCTAAAGACGGGAAACATCTGCGAAAGCAAAAGGTCGGCATTAATCCTGACACATAAGGGAAATGAAGGGACATTAAGGCAGTCTACTATGAGAgcaggtgaagaaaaaaaaaaaaaaatgaaagagcaAGGCAAAAGCAAAAGCTGCTGAAACCATCATACTCGTAAAAGTTCCTTTCTCTTATTCTAACCATCTACAACAGACGATTAAATAATTGCACTGTCGAATGTGAACACTAACATGGACGATTTGTTACAGAATCATATCGCACTTCATATGTGGCATTAGCCAACAGGCTTAAAGACTAAAGACAAATGATATGTAATGCAACACAGACAAGAGGAATGAATTTCTGAGTAACGTATTAAAAATTTTGCAGGAACCTCCCCAAGCTATTTCATGTCCAaataaaatgaagcaataaTGTTTTGAGGTAATAGATTACACATGATAAAActaagtcctttttttttttacatcacattttaaataaggTTGTAATTGTATGTGTGAATTTCATGAATGCTGTACATTCTGTCATTCAGTCTACCTGTACGTGAACCAACGTGAAAATCTGAGAGGTGATGAATCAGTCCCAATCGGAGAATCCATCGACGACGGCTCTTTCCGTTTCAGTTGTGACTGGAGCATCGTCCAGCCAAATCCAGGCCTTggagtctttttttcttttattaaatgaCTCTCACACCTACTGGCATCTAGgtagcacacatacacactacatgtcctacaaaaaagcaaaaatctgtgtcaaaaaaaaaaaaatctagattaTAAATCATCGCCTAGCAGTCTGCTGGCTTTCCAGGTCATTCTCTAGACGCCAGTCCATTTGAAATCTGATAGTGCCACTACACGAGCttcaaaaaagcaaaacaaaaaagagcaacaacaagaaaaaaaaagcaaacacagtCAGGAACGCTATGGACAATTATCATAGGTGATATGAATAAGAAAGTGGGATATTCTGTGTGCAACTGACAAAAACggtgctggaaaaaaaataaaaaatcaaacgTGATGTTTGAATGATAATACACATACATTCTGTCACTCGTTCCGtctcttttcttcacatattttGTGGCACATGGGGAAGGGGGAGTTTAGGCAAAGTGCTTCCGTACTGAATATAAGGGTCCTACAAGCATTTACACAGTAGATACAGGCACTTGAAAGTCTTTGGTTGGAGTGACCCAACATTGCAGAGATTCGCATCACAGTTTGTTGTCACCTTCCTCCTGGGTTCAATAGGTGACGAGTTTTTCACTTTCCCCTCCTCCACGTCCGATATGGTTTATTCCAGATTCTCCAGTCTGACGCTGAACGAGTTCAGTCCATATTTTCCATATTATGATCATTCTTATCCCTCTGACAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU458097 True 2782 lncRNA 0.35 2 14073248 14076060

Neighbor

gene id symbol gene type direction distance location
rcc1l rcc1l,wbscr16,LOC107587689,LOC107710726,LOC107712126,LOC107681900 coding upstream 183981 13876835 ~ 13889267 (+)
ncf1 ncf1 coding upstream 198339 13870651 ~ 13874909 (+)
pex12 pex12 coding upstream 262694 13806887 ~ 13810554 (+)
LOC113531586 gas2l2 coding upstream 309163 13751910 ~ 13764085 (+)
im:7138535 LOC108259897 coding upstream 321425 13744586 ~ 13751823 (+)
rad51d rad51d coding downstream 10582 14086642 ~ 14093355 (+)
nup88 nup88,LOC107709758,LOC107664301,LOC107600765 coding downstream 672378 14748438 ~ 14756063 (+)
mis12 mis12 coding downstream 716073 14792133 ~ 14795940 (+)
mcama LOC108260060 coding downstream 735042 14811102 ~ 14855941 (+)
tlcd5b tmem136,LOC108260061,LOC108428603 coding downstream 782497 14858557 ~ 14860744 (+)
G386476 NA non-coding upstream 14745 14058228 ~ 14058503 (+)
G386462 NA non-coding upstream 35326 14037683 ~ 14037922 (+)
G386457 NA non-coding upstream 40007 14032835 ~ 14033241 (+)
G386416 NA non-coding upstream 83932 13988556 ~ 13989316 (+)
G386386 NA non-coding upstream 111539 13961413 ~ 13961709 (+)
G386490 NA non-coding downstream 54111 14130171 ~ 14130627 (+)
LOC117596237 NA non-coding downstream 76084 14152144 ~ 14184051 (+)
G386495 tmem132e non-coding downstream 93998 14170058 ~ 14175425 (+)
G387160 NA non-coding downstream 632796 14708856 ~ 14716055 (+)
G387196 foxr1,zgc:171734,LOC107691807,LOC107712932,LOC107600773 non-coding downstream 758859 14834919 ~ 14924865 (+)
G386325 NA other upstream 245100 13825850 ~ 13828148 (+)
G386294 NA other upstream 249193 13821788 ~ 13824055 (+)
zgc:63972 LOC108260458 other upstream 1272331 12790901 ~ 12800917 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other upstream 2238204 11718018 ~ 11835044 (+)
ajm1 c28h9orf172 other upstream 2747193 11297974 ~ 11326055 (+)
c27h11orf88 c28h11orf88 other downstream 1087324 15163384 ~ 15233692 (+)
sik2a sik2 other downstream 1168945 15245005 ~ 15274079 (+)
zgc:193711 LOC108260397 other downstream 1278300 15354360 ~ 15361054 (+)
fkbp6 fkbp6 other downstream 1285298 15361358 ~ 15367247 (+)
LOC113531170 nyap1,LOC108259934,LOC101885998,LOC107596102 other downstream 1731489 15807549 ~ 15859905 (+)

Expression


Co-expression Network