G386476


Basic Information

Item Value
gene id G386476
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 14058228 ~ 14058503 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU458124
GTCATCCTCACTAAGCCTTGCAAAGCacagattgtttttttccttgcaGATTAAGAGGGAAAAATGCTAAACAGCAAACCAGTTTCTCCTGTTGGATCTGGATTGTGGCCTTACCTCTCTCTGTTCGCTACAGATCTTGCAGAGCCACTGAGCTCTCTTCTGACTGCATGCTGTCTCAATCCCACACTTGGTGCACactttctgaaaaaaacaaaaaaagcagcatttGTATCAACCCCCACATGTGATTGGCCtgagccatgctgatattctgac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU458124 True 276 lncRNA 0.45 1 14058228 14058503

Neighbor

gene id symbol gene type direction distance location
rcc1l rcc1l,wbscr16,LOC107587689,LOC107710726,LOC107712126,LOC107681900 coding upstream 168961 13876835 ~ 13889267 (+)
ncf1 ncf1 coding upstream 183319 13870651 ~ 13874909 (+)
pex12 pex12 coding upstream 247674 13806887 ~ 13810554 (+)
LOC113531586 gas2l2 coding upstream 294143 13751910 ~ 13764085 (+)
im:7138535 LOC108259897 coding upstream 306405 13744586 ~ 13751823 (+)
rad51d rad51d coding downstream 28139 14086642 ~ 14093355 (+)
nup88 nup88,LOC107709758,LOC107664301,LOC107600765 coding downstream 689935 14748438 ~ 14756063 (+)
mis12 mis12 coding downstream 733630 14792133 ~ 14795940 (+)
mcama LOC108260060 coding downstream 752599 14811102 ~ 14855941 (+)
tlcd5b tmem136,LOC108260061,LOC108428603 coding downstream 800054 14858557 ~ 14860744 (+)
G386462 NA non-coding upstream 20306 14037683 ~ 14037922 (+)
G386457 NA non-coding upstream 24987 14032835 ~ 14033241 (+)
G386416 NA non-coding upstream 68912 13988556 ~ 13989316 (+)
G386386 NA non-coding upstream 96519 13961413 ~ 13961709 (+)
G386382 NA non-coding upstream 99882 13958144 ~ 13958346 (+)
G386458 NA non-coding downstream 14745 14073248 ~ 14076060 (+)
G386490 NA non-coding downstream 71668 14130171 ~ 14130627 (+)
LOC117596237 NA non-coding downstream 93641 14152144 ~ 14184051 (+)
G386495 tmem132e non-coding downstream 111555 14170058 ~ 14175425 (+)
G387160 NA non-coding downstream 650353 14708856 ~ 14716055 (+)
G386325 NA other upstream 230080 13825850 ~ 13828148 (+)
G386294 NA other upstream 234173 13821788 ~ 13824055 (+)
zgc:63972 LOC108260458 other upstream 1257311 12790901 ~ 12800917 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other upstream 2223184 11718018 ~ 11835044 (+)
ajm1 c28h9orf172 other upstream 2732173 11297974 ~ 11326055 (+)
c27h11orf88 c28h11orf88 other downstream 1104881 15163384 ~ 15233692 (+)
sik2a sik2 other downstream 1186502 15245005 ~ 15274079 (+)
zgc:193711 LOC108260397 other downstream 1295857 15354360 ~ 15361054 (+)
fkbp6 fkbp6 other downstream 1302855 15361358 ~ 15367247 (+)
LOC113531170 nyap1,LOC108259934,LOC101885998,LOC107596102 other downstream 1749046 15807549 ~ 15859905 (+)

Expression


Co-expression Network