G386490


Basic Information

Item Value
gene id G386490
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 14130171 ~ 14130627 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU458138
ggatcatgagccctttctttccttctccatacttttctcttcccatcattctggtacaagttaatcttgcatcagaactggtcaggttttttagcaaagtctaatctggcctttgtgttcttgagtgttaccagtggtttgcatcttgaggtaaaccgtctgtatttacattcatgaaggtggctcttgattgtagactttgacaatgataggcctacctcctccagagtgttcctgacttggctagatgttgtgaaggggttgttcttcaataagaaaagaattctgcaatcatccactttagttgttttctgtggtctcccaggccttttggtgttgctgagctcgccagtgcattccttctttttaagaatgtaccaaattgttgatttggccactcctaaagtttctgctatctctctgataggtctgttttggtttttcagcctaatgatga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU458138 True 457 lncRNA 0.41 1 14130171 14130627

Neighbor

gene id symbol gene type direction distance location
rad51d rad51d coding upstream 36816 14086642 ~ 14093355 (+)
rcc1l rcc1l,wbscr16,LOC107587689,LOC107710726,LOC107712126,LOC107681900 coding upstream 240904 13876835 ~ 13889267 (+)
ncf1 ncf1 coding upstream 255262 13870651 ~ 13874909 (+)
pex12 pex12 coding upstream 319617 13806887 ~ 13810554 (+)
LOC113531586 gas2l2 coding upstream 366086 13751910 ~ 13764085 (+)
nup88 nup88,LOC107709758,LOC107664301,LOC107600765 coding downstream 617811 14748438 ~ 14756063 (+)
mis12 mis12 coding downstream 661506 14792133 ~ 14795940 (+)
mcama LOC108260060 coding downstream 680475 14811102 ~ 14855941 (+)
tlcd5b tmem136,LOC108260061,LOC108428603 coding downstream 727930 14858557 ~ 14860744 (+)
arhgef12b LOC108260059,LOC107691754,LOC107600769 coding downstream 731731 14862358 ~ 14916498 (+)
G386458 NA non-coding upstream 54111 14073248 ~ 14076060 (+)
G386476 NA non-coding upstream 71668 14058228 ~ 14058503 (+)
G386462 NA non-coding upstream 92249 14037683 ~ 14037922 (+)
G386457 NA non-coding upstream 96930 14032835 ~ 14033241 (+)
G386416 NA non-coding upstream 140855 13988556 ~ 13989316 (+)
LOC117596237 NA non-coding downstream 21517 14152144 ~ 14184051 (+)
G386495 tmem132e non-coding downstream 39431 14170058 ~ 14175425 (+)
G387160 NA non-coding downstream 578229 14708856 ~ 14716055 (+)
G387196 foxr1,zgc:171734,LOC107691807,LOC107712932,LOC107600773 non-coding downstream 704292 14834919 ~ 14924865 (+)
G387197 NA non-coding downstream 725641 14856268 ~ 14868701 (+)
G386325 NA other upstream 302023 13825850 ~ 13828148 (+)
G386294 NA other upstream 306116 13821788 ~ 13824055 (+)
zgc:63972 LOC108260458 other upstream 1329254 12790901 ~ 12800917 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other upstream 2295127 11718018 ~ 11835044 (+)
ajm1 c28h9orf172 other upstream 2804116 11297974 ~ 11326055 (+)
c27h11orf88 c28h11orf88 other downstream 1032757 15163384 ~ 15233692 (+)
sik2a sik2 other downstream 1114378 15245005 ~ 15274079 (+)
zgc:193711 LOC108260397 other downstream 1223733 15354360 ~ 15361054 (+)
fkbp6 fkbp6 other downstream 1230731 15361358 ~ 15367247 (+)
LOC113531170 nyap1,LOC108259934,LOC101885998,LOC107596102 other downstream 1676922 15807549 ~ 15859905 (+)

Expression


Co-expression Network