c27h11orf88 (c28h11orf88)


Basic Information

Item Value
gene id c27h11orf88
gene name c28h11orf88
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 15163384 ~ 15233692 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU459148
ATCATGGGGGTTGCAGTTTCTCTTGCCagctggctgctgcattctcaGCCGTGTCCATATGCACATAGATTACTACTGGTGGAGAGATAGGTGGTTAGCTATTGAACATCACATCTTGCTTTTTCACACACCAGTTTATTGTGTCTTTTTCTCCAAGGCAAAAAAGCGTGATGAGATCATGGCACTCTTAAAGAAGCAGAGAGAAGATCGGATTAAGAAAGAAATGGTATCCCGTCTGCACAAGCCAAGTAGACCTGAGCTGACTGAGAGGTTTTCTTGCAAGACTCCTCCTGAGGTTCTGGATCAGGACATAAAGGATGTCCGAGACCTTGTATAAAGGGTGCCACCTGCCTTTTGAAACCTCATACTATAATTTTGTTTGGAGTATAAGAATATGAATGGTACTTTAGATTAAACTGTCCTGTAACAAATGTATGTTGCCTGTACACACTTCTTGTGGAAAACAGAAACTtt
>XM_026921448.2
ACGCGCCGGTGCCTTCACTTCCGGTAAACACACTCAGCCCTTGGCTCCAGTACAGAAGTCTTATTATGAGCGAAGTGCAAGATATAGTAGACGCTGTAGAAACACTTTCAGATGTTGATGTGTGTTACACGGTGTTTGAAGGCTCGTCGCAAGAGGATGTAGCTTACGCCAAAGTCTTCTGGAGCTCCCTGTGTTTACAGCCACCCATCGAGTCCAGCTTAGTGTCGGTGGATATCAGACAGCGTCTGAAGGTAGCCAAGACCCCGCAACgcaagtCCAGTAATAATGTTCCCAAGCAGCCACCATGGTCTAAAAATGATGAGAGCCTACAGAAGGCGTACCAGCTACAGATGCAGGATGAGAAGCAGAGATATCTGGAAATGGCAAAAAAGCGTGATGAGATCATGGCACTCTTAAAGAAGCAGAGAGAAGATCGGATTAAGAAAGAAATGGTATCCCGTCTGCACAAGCCAAGTAGACCTGAGCTGACTGAGAGGTTTTCTTGCAAGACTCCTCCTGAGGTTCTGGATCAGGACATAAAGGATGTCCGAGACCTTGTATAAAGGGTGCCACCTGCCTTTTGAAACCTCATACTATAATTTTGTTTGGAGTATAAGAATATGAATGGTACTTTAGATTAAACTGTCCTGTAACAAATGTATGTTGCCTGTACACACTTCTTGTGGAAAACAGAAACTttgtacacaattttttttatggattAAAAGACAGATTATAGAAATTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU459148 False 474 lncRNA 0.42 4 15163384 15233645
XM_026921448.2 True 747 mRNA 0.44 6 15226345 15233692

Neighbor

gene id symbol gene type direction distance location
drd2b drd2b,LOC108259734,LOC108428674,LOC107664308,LOC107745132,LOC107691748 coding upstream 25309 15097068 ~ 15138075 (+)
arhgef12b LOC108260059,LOC107691754,LOC107600769 coding upstream 246886 14862358 ~ 14916498 (+)
tlcd5b tmem136,LOC108260061,LOC108428603 coding upstream 302640 14858557 ~ 14860744 (+)
mcama LOC108260060 coding upstream 307443 14811102 ~ 14855941 (+)
mis12 mis12 coding upstream 367444 14792133 ~ 14795940 (+)
layna layn coding downstream 1227 15234919 ~ 15242995 (+)
gig2p LOC108259973 coding downstream 70911 15304603 ~ 15309671 (+)
si:dkey-71l1.1 tomm40l,si:dkey-71l1.1,LOC108259972,LOC103030645,LOC107691796,LOC107745123,LOC107603199,LOC107663776,LOC107574698 coding downstream 80415 15314107 ~ 15321357 (+)
crfb12 NA coding downstream 87973 15321665 ~ 15331023 (+)
mia mia,LOC107691742 coding downstream 108014 15341706 ~ 15343570 (+)
G387208 NA non-coding upstream 227342 14934704 ~ 14936042 (+)
G387196 foxr1,zgc:171734,LOC107691807,LOC107712932,LOC107600773 non-coding upstream 238519 14834919 ~ 14924865 (+)
G387197 NA non-coding upstream 294683 14856268 ~ 14868701 (+)
G387160 NA non-coding upstream 447329 14708856 ~ 14716055 (+)
LOC117596237 NA non-coding upstream 979333 14152144 ~ 14184051 (+)
G387388 NA non-coding downstream 32415 15266107 ~ 15269909 (+)
G387504 NA non-coding downstream 136870 15370562 ~ 15370773 (+)
G387513 NA non-coding downstream 156927 15390619 ~ 15390835 (+)
LOC117596225 NA non-coding downstream 490153 15723845 ~ 15731883 (+)
G387659 NA non-coding downstream 537352 15771044 ~ 15771244 (+)
G386325 NA other upstream 1335236 13825850 ~ 13828148 (+)
G386294 NA other upstream 1339329 13821788 ~ 13824055 (+)
zgc:63972 LOC108260458 other upstream 2362467 12790901 ~ 12800917 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other upstream 3328340 11718018 ~ 11835044 (+)
ajm1 c28h9orf172 other upstream 3837329 11297974 ~ 11326055 (+)
sik2a sik2 other downstream 11313 15245005 ~ 15274079 (+)
zgc:193711 LOC108260397 other downstream 120668 15354360 ~ 15361054 (+)
fkbp6 fkbp6 other downstream 127666 15361358 ~ 15367247 (+)
LOC113531170 nyap1,LOC108259934,LOC101885998,LOC107596102 other downstream 573857 15807549 ~ 15859905 (+)
LOC113531248 NA other downstream 801131 16034823 ~ 16038605 (+)

Expression


Co-expression Network