sik2a (sik2)


Basic Information

Item Value
gene id sik2a
gene name sik2
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 15245005 ~ 15274079 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU459165
AGTATGGACTATGAAGGACTTGTTTTGTCAACTGTAAGAGTggtatttctttgcaaaattAGCTAGAAAAGCACAATAGAAACATGTTCAAGCAAAGATTCAGATTTGTGTCAGTATGAAAGCAATATGTTCTCCCTGATAAGACAATTTTAAggttatttaattactttttaaacttGATCAATTTTACATAGCTATTTGCAAAATGGGAAAAGTCAGCTTGAGAAGCAGAAAAGCAGTTCTGTCCTACTTCTCTAATATTTGGTTCTACTTAAAGGCTTGTTATACTTCATCACACCTGCTTCTGACAGCCAAATGAAACAAACTTCAGAGAGCCATGAGCTTTTATAGTCTTTCAGAACAGTGATCATAGCTGTCTATCACTCAAGGAGGTGGGTAGTACACAGCAAGGCAAGTTCACATTTTATTGTCGCCCATTTAACAAAAATGGTGGCATTTCAATGGACACCATTTTTGCTGCGCTCTCTCCCCGAAGTGCCTTTCCACGGCGCAGAAGGCATCGGAAGCCTGTTGGATGAAAGTACAAGTGGGCCTTTAGGCACTTACAAATGTGTCAGAAGGAAACATCTGTCATATCAAGCAATGTTAAATCCACTAGTCACTCCAAATGACTATTGAACCAAACAATGATGTTGGTAGGCTTGTTTCATTCAAGTTCACCACATGTGGTATTAAAATAATGCAGTTTATTCAGTACACTTAAACAGTTCCTACACTCATTGGATATTTTTTATTAGATACCCCTCTGAGTAGTTATACTTACTGAATAAAAAGCCCATTTGATGCTGTATAGACTTTGTCAGCCAACTTGTCTGTCAATGGAAAGTGACCACCATGGGAGCACAACTGACTAGATTTTTTTGGTGGTTGATCAtcctcagcacagcagtgacactgccATGGTAGTGCATGTTTCACTGGTACATCAGTAGCTAACACCGTGCTGGGGGATTTTCCCCATTGATGCACCAGATAGAAGGGGGCTGATAGATTATGCGTAGCAACGTAGTCAATAATTGTATACCAAAAAAGCACCTACAACGTCAAGGAGTCTAATATGAAGCCATTTCAGATTCCGTGCGAGCTGTAGCGACTTTGTCAGGAAATACAGTATTTCATTATTATAGTCATGGGCCTTTTTTCTGTGAAATGTTGTGAAATAATGTTCAAGGAGTTGCTTCcttttaaacagaactaaaGAACACTATTTATGTTTTAGAGGACTGATGAAGTATGATACATAGGCTGAATCCTAAATGGCTTCCTATTATACCCCTAAATTTCTACTCCCTATATATTTAAACTGCATATATTATGAAAGAATGGTTTCTATATCCTAGCTAGTGAGTTATATATTGAATGTAGGGCCTTTAATGGTTACAGTACAAGAATATTTACCATCCAAACGTATAATAGCAATACAGAACTTTTCAGTAATAGCCCTGACATAAAAATAGGTCTTTGTAGGGAATGTGTTTACTTTTTGCCAGTTCACAAAAGTTTAATCCGGTAGTACAGAGCCTACAGAGACTTTAATCTAGTGACCCAGACAATGGTGTCTGTGAGTAATGTACCTTGACGCAGGGAAGAATATGATTCATGATGATCGTCTCTCGGCTGTCTTCCGGTAAATTCTCGCAGAATTCTGATGACCAAAGTATAAaaagcagtgaaatgaaacaaaacagacTAATGGACAAATGACTGTGTAACAGTTCTTCTGGTAACTAGCAGTAACAGTTTCCAATGAGGGAACATAATAGCCAAAAGGGCAGCCATACCTTTGACCTTATTGGCAGCAGCGGCACGCACTTCAGCCTCACAGTCTTTGAGAAGGTTCTGGAAGGCTGGCACAAGGTCGTTCTTTGTGATTTCTGGACCGACTGCCTTTTGT
>XM_026922534.2
ttaaatcattaagcCGGTCACTACCTCTACCTTTCCGTTTTTGGACGCACAGGTGCGCGCGCTCCCCGCGTCTCCGTTAAAAGCAGCGGCCATGGCCGAGCCGGAGCGGAAACCCTGCCACCGGGCGCCGGTTCGGGTCGGATTTTATGACATCGAGCGCACTTTGGGGAAAGGGAACTTCGCTGTGGTGAAGCTGGCGAGACACCGGATCACCAAGTCGGAGGTGGCCATAAAGATCATAGATAAGACACAGTTGGATGCTGCAAACCTGGAGAAGATCTACAGGGAGGTGGAGATCATGAAGCTGCTGGACCATCCACATATCATTAAGCTTTACCAGGTCATGGAGACCAAGAACATGCTCTACTTGGTCACTGAGTATGCCAAAAATGGGGAGATCTTTGATTACCTGGCTAACCATGGGCGTTTGAGTGAGGCAGAAGCACGGAGAAAGTTCTGGCAGATCCTGTCAGCCGTGGAGTACTGCCACGAGCGCAGCATCGTTCACCGAGACCTGAAGGCTGAGAACCTGCTGCTTGATGCAAACATGAACATCAAGATTGCAGACTTTGGCTTTGGGAACTTCTTCCAGCCAGGGCAGCCTCTAGCCACATGGTGTGGAAGCCCACCTTACGCGGCTCCCGAGGTGTTTGAAGGGCAGAAATATGAAGGTCCGCAGCTGGACATTTGGaGCATGGGGGTGGTCTTATATGTCCTGGTGTGTGGCGCATTACCATTTGATGGTCCCAGTCTGCCTGTTTTGAGACAGAGGGTCCTTGAAGGCCGTTTCCGCATCCCTTACTTCATGACCGAGGACTGCGAACATCTGATCCGGAGGATGCTGGTCCTTGACCCGGCCAAGAGGTTGGCACTAAGCCAGATTCGTCAGCACCGCTGGATGGTGCAGGAGGTACCATCACCAAAGCCCCAGCTCAACTGGCAGGGCGTGGGAGAGCACAGTGAGCAGGTCCTTCGTCTCATGCACAACCTCGGCATCGACCAGCACAAGACCATAGAGTCTCTCCAGAACAAAAGCTACAATCATTTTGCTGCTATTTACTACCTGCTGGTGGAGCGACTCAAGGCCCACAGAAGCAGTTTCCCTGTGGAACAGCGGCTCAACGGTGCTCAGCGCCGGCCAAGCACAGTGGCTGAGCAGACTGTCCTCAAGGCTTCTGTTCCAGCTCTGCAAGCCACGCGCCACCTGCGCTCACCCATTCTCCTGCAGACCTCCACTGAAACTTTCAGCTTCACACAAAGCACTCCAGAGCAGGCCCTAATGGAGGAGGATGTAGCCACTCCCAAGGTGGATGGCTGTCTGCTGGAGTCTCTGCCCCCTGTTGTGGTGCGTAATGCCAGTGGCTCATTTCCAGGCACTGTCAAAGAGTCATCCATAGATGAAGGAATTGAGGCTGAGGACGAACAGACCATCCACTTAAGCCAGCGCAGACAAACACTGTCAGAGGGCAACAGCCAACTGGGCACAGTGTCtgcctcaggGAAGCTCCTCTCCATGGCTTTGAACCCATCTCTGGGCAGCATGGACTCAGAGTATGATTTGGGCTCCACACACAGTGACCTCAGCCTGGCGGAGGACCCTCCCCCCCATCGAGGCACGCTGACAGCGATGCCTGCCAGTCAAGCAGACCCCACCTTCCCCTCCTCGAAACCCTCTAATCCCAGCCCCCAGGCCCTTAGCTCAGAGGAGCGTAAGGCTCATAATCATTCATCAGTCAGCTTTCGTGAAGGCCGACGAGCATCAGACACGTCTCTGACACAAGGTCTGGTAGTGTTCAGGCAGCACCTTCAAAATCTTGCCAGGACCAAAGGAATTCTGGAGTTGAACAAAGCCCAGGTGGTGCTGGGATCTGGAGATGGAGACATCAGCTTCCAGCCTAAAAACCTGGAGCTTCAACAGCAGGGAGAAGCACATCAGTGTCGTAGTGGAAAGGACACAGCAATGTTCTCAACTAAAATGCACCCGTATCTGCTGTCTAGACGGCAGTCACTGGAAACCCAGTGTCTTGCTCAGAGGCTGCAGAGGGCTAGTCTGCTGGCCAGTGGTGCTGGCAGTGGGCAAATGTTCTGTAAGGATCCTACGCCTCGTACACTGGAGCAGCAACTACAGGAATACAGACTCCAGCAGAAGAGACTCCATCTACAGAAGCAGTCTCATCTGCAGGCCTACTTCCACCAGACTCAGCTGGCAGAGGACCGGTACCCACCCGTGCAGGATCACGCCGATACCTCCCTCACCAGCCCAACTTTCTCTCGTACTCCTCAGACCCTCAGCCCACTCCTGGAGCCTGGGACCCCCTACCCAGAGATGCACTCTGTGCCCTCAGACTGTGAGACGATGGAGGCTCAACAAGGAGGCTGTGTTCTGGTGAAGTGAAGCTCTTCCCCTTCCAGCCAGACTCACTGGGGCTGGATctcagacacaaaaaaaaaaaaacaaaaaaacaggagaaCAGCACCAGACTCTCACGGACAAGCAAAATAGGGTGTTGGTGTTCAATCttaatgagacacacacaccccattgTGATCCCAATCCTAGAGTATGGACTATGAAGGACTTGTTTTGTCAACTGTAAGAGTggtatttctttgcaaaattAGCTAGAAAAGCACAATAGAAACATGTTCAAGCAAA
>XM_034300939.1
GAGAAGATCTACAGGGAGGTGGAGATCATGAAGCTGCTGGACCATCCACATATCATTAAGCTTTACCAGCAGGGACCGAGATCATTACTGGAAGTCAGAGTTTCAGCATCCCATTTGTTTTATGATATGAAGAAATTTGTCCAATTAGGCAACATCATGGCCTCCATTATGTTAACAGCCTAACAGTGGATCTTGGAGGATCACCACATTAAGGTCATGGAGACCAAGAACATGCTCTACTTGGTCACTGAGTATGCCAAAAATGGGGAGATCTTTGATTACCTGGCTAACCATGGGCGTTTGAGTGAGGCAGAAGCACGGAGAAAGTTCTGGCAGATCCTGTCAGCCGTGGAGTACTGCCACGAGCGCAGCATCGTTCACCGAGACCTGAAGGCTGAGAACCTGCTGCTTGATGCAAACATGAACATCAAGATTGCAGACTTTGGCTTTGGGAACTTCTTCCAGCCAGGGCAGCCTCTAGCCACATGGTGTGGAAGCCCACCTTACGCGGCTCCCGAGGTGTTTGAAGGGCAGAAATATGAAGGTCCGCAGCTGGACATTTGGaGCATGGGGGTGGTCTTATATGTCCTGGTGTGTGGCGCATTACCATTTGATGGTCCCAGTCTGCCTGTTTTGAGACAGAGGGTCCTTGAAGGCCGTTTCCGCATCCCTTACTTCATGACCGAGGACTGCGAACATCTGATCCGGAGGATGCTGGTCCTTGACCCGGCCAAGAGGTTGGCACTAAGCCAGATTCGTCAGCACCGCTGGATGGTGCAGGAGGTACCATCACCAAAGCCCCAGCTCAACTGGCAGGGCGTGGGAGAGCACAGTGAGCAGGTCCTTCGTCTCATGCACAACCTCGGCATCGACCAGCACAAGACCATAGAGTCTCTCCAGAACAAAAGCTACAATCATTTTGCTGCTATTTACTACCTGCTGGTGGAGCGACTCAAGGCCCACAGAAGCAGTTTCCCTGTGGAACAGCGGCTCAACGGTGCTCAGCGCCGGCCAAGCACAGTGGCTGAGCAGACTGTCCTCAAGGCTTCTGTTCCAGCTCTGCAAGCCACGCGCCACCTGCGCTCACCCATTCTCCTGCAGACCTCCACTGAAACTTTCAGCTTCACACAAAGCACTCCAGAGCAGGCCCTAATGGAGGAGGATGTAGCCACTCCCAAGGTGGATGGCTGTCTGCTGGAGTCTCTGCCCCCTGTTGTGGTGCGTAATGCCAGTGGCTCATTTCCAGGCACTGTCAAAGAGTCATCCATAGATGAAGGAATTGAGGCTGAGGACGAACAGACCATCCACTTAAGCCAGCGCAGACAAACACTGTCAGAGGGCAACAGCCAACTGGGCACAGTGTCtgcctcaggGAAGCTCCTCTCCATGGCTTTGAACCCATCTCTGGGCAGCATGGACTCAGAGTATGATTTGGGCTCCACACACAGTGACCTCAGCCTGGCGGAGGACCCTCCCCCCCATCGAGGCACGCTGACAGCGATGCCTGCCAGTCAAGCAGACCCCACCTTCCCCTCCTCGAAACCCTCTAATCCCAGCCCCCAGGCCCTTAGCTCAGAGGAGCGTAAGGCTCATAATCATTCATCAGTCAGCTTTCGTGAAGGCCGACGAGCATCAGACACGTCTCTGACACAAGGTCTGGTAGTGTTCAGGCAGCACCTTCAAAATCTTGCCAGGACCAAAGGAATTCTGGAGTTGAACAAAGCCCAGGTGGTGCTGGGATCTGGAGATGGAGACATCAGCTTCCAGCCTAAAAACCTGGAGCTTCAACAGCAGGGAGAAGCACATCAGTGTCGTAGTGGAAAGGACACAGCAATGTTCTCAACTAAAATGCACCCGTATCTGCTGTCTAGACGGCAGTCACTGGAAACCCAGTGTCTTGCTCAGAGGCTGCAGAGGGCTAGTCTGCTGGCCAGTGGTGCTGGCAGTGGGCAAATGTTCTGTAAGGATCCTACGCCTCGTACACTGGAGCAGCAACTACAGGAATACAGACTCCAGCAGAAGAGACTCCATCTACAGAAGCAGTCTCATCTGCAGGCCTACTTCCACCAGACTCAGCTGGCAGAGGACCGGTACCCACCCGTGCAGGATCACGCCGATACCTCCCTCACCAGCCCAACTTTCTCTCGTACTCCTCAGACCCTCAGCCCACTCCTGGAGCCTGGGACCCCCTACCCAGAGATGCACTCTGTGCCCTCAGACTGTGAGACGATGGAGGCTCAACAAGGAGGCTGTGTTCTGGTGAAGTGAAGCTCTTCCCCTTCCAGCCAGACTCACTGGGGCTGGATctcagacacaaaaaaaaaaaaacaaaaaaacaggagaaCAGCACCAGACTCTCACGGACAAGCAAAATAGGGTGTTGGTGTTCAATCttaatgagacacacacaccccattgTGATCCCAATCCTAGAGTATGGACTATGAAGGACTTGTTTTGTCAACTGTAAGAGTggtatttctttgcaaaattAGCTAGAAAAGCACAATAGAAACATGTTCAAGCAAA

Function

symbol description
sik2 Enables ATP binding activity; magnesium ion binding activity; and protein serine/threonine kinase activity. Involved in intracellular signal transduction and protein autophosphorylation. Predicted to be located in nucleus. Predicted to be active in cytoplasm.

NR:

description
PREDICTED: serine/threonine-protein kinase SIK2-like isoform X1

GO: NA

KEGG:

id description
K16311 SIK2; serine/threonine-protein kinase SIK2

RNA

RNA id representative length rna type GC content exon number start site end site
TU459165 False 1915 lncRNA 0.39 2 15261641 15274079
XM_026922534.2 True 2656 mRNA 0.54 15 15245005 15261736
XM_034300939.1 False 2529 mRNA 0.53 15 15247382 15261736

Neighbor

gene id symbol gene type direction distance location
layna layn coding upstream 2010 15234919 ~ 15242995 (+)
drd2b drd2b,LOC108259734,LOC108428674,LOC107664308,LOC107745132,LOC107691748 coding upstream 106930 15097068 ~ 15138075 (+)
arhgef12b LOC108260059,LOC107691754,LOC107600769 coding upstream 328507 14862358 ~ 14916498 (+)
tlcd5b tmem136,LOC108260061,LOC108428603 coding upstream 384261 14858557 ~ 14860744 (+)
mcama LOC108260060 coding upstream 389064 14811102 ~ 14855941 (+)
gig2p LOC108259973 coding downstream 30524 15304603 ~ 15309671 (+)
si:dkey-71l1.1 tomm40l,si:dkey-71l1.1,LOC108259972,LOC103030645,LOC107691796,LOC107745123,LOC107603199,LOC107663776,LOC107574698 coding downstream 40028 15314107 ~ 15321357 (+)
crfb12 NA coding downstream 47586 15321665 ~ 15331023 (+)
mia mia,LOC107691742 coding downstream 67627 15341706 ~ 15343570 (+)
c27h11orf1 c28h11orf1 coding downstream 69559 15343638 ~ 15346909 (+)
G387386 btg4,LOC107745130,LOC107556417 non-coding upstream 26895 15215977 ~ 15218110 (+)
G387383 NA non-coding upstream 37108 15205754 ~ 15207897 (+)
LOC113531625 NA non-coding upstream 40123 15182313 ~ 15204882 (+)
G387208 NA non-coding upstream 308963 14934704 ~ 14936042 (+)
G387196 foxr1,zgc:171734,LOC107691807,LOC107712932,LOC107600773 non-coding upstream 320140 14834919 ~ 14924865 (+)
G387504 NA non-coding downstream 96483 15370562 ~ 15370773 (+)
G387513 NA non-coding downstream 116540 15390619 ~ 15390835 (+)
LOC117596225 NA non-coding downstream 449766 15723845 ~ 15731883 (+)
G387659 NA non-coding downstream 496965 15771044 ~ 15771244 (+)
G387675 NA non-coding downstream 523515 15797594 ~ 15803923 (+)
c27h11orf88 c28h11orf88 other upstream 11313 15163384 ~ 15233692 (+)
G386325 NA other upstream 1416857 13825850 ~ 13828148 (+)
G386294 NA other upstream 1420950 13821788 ~ 13824055 (+)
zgc:63972 LOC108260458 other upstream 2444088 12790901 ~ 12800917 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other upstream 3409961 11718018 ~ 11835044 (+)
zgc:193711 LOC108260397 other downstream 80281 15354360 ~ 15361054 (+)
fkbp6 fkbp6 other downstream 87279 15361358 ~ 15367247 (+)
LOC113531170 nyap1,LOC108259934,LOC101885998,LOC107596102 other downstream 533470 15807549 ~ 15859905 (+)
LOC113531248 NA other downstream 760744 16034823 ~ 16038605 (+)
si:ch211-284e13.4 LOC108260367,LOC108427482 other downstream 803010 16077089 ~ 16096184 (+)

Expression


Co-expression Network