zgc:193711 (LOC108260397)


Basic Information

Item Value
gene id zgc:193711
gene name LOC108260397
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 15354360 ~ 15361054 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU459288
GAACAAGGAAATGAAGACGCTAATAAAATGAGCTGGTTGTTGTTGGACTCTTCAAACATGCGCAGCCATGGGAAACAGAGTAACCAATACCTTGGATAAGTGGGGTTTAAATCCAAGGAATCTGAGTCTAAGGCGGTCAAGAAGAAAAGACTGTAGATCCCCACATATATGACCGTGTGACAGCCGAGCCAGAGTATGCCAAAgtgaataagaagaagaagaagaccgATTCTGATGGCTTGCACTATGCAGAAATTCAGGTGCTACAATCTGAAAGCACAAGCAAGCAGAAGACCACGCCATCCAAAAACTCAAGCACGGAATATGCAACCATAGACTTTCTGAAAGGTGCTAAACCAAAAGAGTCTGCCGAACCTGCAGATATACTTATTCCACCTGGAGAGCTTCAGAGGCTAATGGTTAAGTCTCAAAAGAAGAGGAGTGCTTCCTCACATCGGGCTGTCATGGTTTgaacaaatgatttaaaaaaaaaaaaaaaaaaaattgtatatagTTTTTATAAATCaggatgagttttttttttaaagaaagatcaAATGTATGCTGTATTTGTTACACATTAATCATAATTCATAATCATTTCCTGCACACTGGATATTCTCAAATGTTGtacaaaaatgtgaaagaataatgaaagaaaagaacattgtAGCATGCAGTTAGTACTTCTGGTCAGTTGATTTCACAGTAACGGTAGTGGTTGCCTACTGATCCTATCTATCATACTGTGCATCCTTTGCATAATCTgttcaggaaaaataaatagCTGCAGGCATATAATCTGTGTTCCTATCTAAATGGGATACACCCATGGATGGCTCGTATAAATGGACTAGCAGAGCTAAGCCTCCCTGtttttcaaagataaaaagacatcagcAAGGTTTAAATTTTGGTGcacacatcagattatttgatgttaacaaatgttttaaaataaaataattttgggACTTTGCTCCACTAAAGTGccacagcaccaccaatggttttaagaataaaaagtacagaatggtatgaagaagcaagGATTGGGCTGATTACTTTgcagcccagactgtagattcatgcagcctattaGTCATAGTTGTGTTGggtgattacacagaatgaCACACCCCCAAGATTTGCTCTCCATTTGGGCTGGTACAGTCTCAGGCATAATGAACAAAGtgaattatttactctatcatcttTTTTGCCCAAAATGCATTtgaaggagaaactaaaagtagatagaccGAGCACACATCGTACAATCagagtacaaattacacaacagtaaaataataataataataataatactttcaTATATTGTCTTAAATGATTGTaggatataaaaacaaaacgaaCATTTTATGACTTGGTATTAAAGATTAATGATTGAACTCTATAAATGAACTCCATCTTGTTTTCAGAAACCACAACAGTTATATTGCTTCTATATATTACCACTATTCAACTAATGAATTTGTGACGGTATTATGTGATATTAGAAGAAAACCTGCTCTTTTGAAATCACTGTgaagttttaattaaatcttCAAGTATTCAAGGTCAAAAGatctatttaacaaaaatatgtacaaaacaTGTACATTTAGGTTTATAGAAtttcagaagaaagaaaagaaagaaatgtaggAAGTCATGCTCTGAAGGATTgtttttcatataaatatttgtccttttttttggtACTTCTTGTTGCAAGGAAATTGTGAttg
>XM_034300493.1
TTCCAGTCAccatttctatatttatataatcaggTTGTCTGTAATTTTATTAGTCTTCCATTCATTGTCATATCCTGCCAAAGAAAGGATATCTATAGGTTTGCTAGTTAAACGTTCACCACAGAGATAAGGTCAAAGGGACAAACGTGGTGTACATTCATAGCACACCTGCCCAACTTCACTTCCCTCAGAACAAGGAAATGAAGACGCTAATAAAATGAGCTGGTTGTTGTTGGACTCTTCAAACATGCGCAGCCATGGGAAACAGAGTAACCAATACCTTGGATAAGTGGGGTTTAAATCCAAGGAATCTGAGTCTAAGGCGGTCAAGAAGAAAAGCTCCACCTGCAGTTTCACCTCATCAGACTGTAGATCCCCACATATATGACCGTGTGACAGCCGAGCCAGAGTATGCCAAAgtgaataagaagaagaagaagaccgATTCTGATGGCTTGCACTATGCAGAAATTCAGGTGCTACAATCTGAAAGCACAAGCAAGCAGAAGACCACGCCATCCAAAAACTCAAGCACGGAATATGCAACCATAGACTTTCTGAAAGGTGCTAAACCAAAAGAGTCTGCCGAACCTGCAGATATACTTATTCCACCTGGAGAGCTTCAGAGGCTAATGGTTAAGTCTCAAAAGAAGAGGAGTGCTTCCTCACATCGGGCTGTCATGGTTTgaacaaatgatttaaaaaaaaaaaaaaaaaaaattgtatatagTTTTTATAAATCaggatgagttttttttttaaagaaagatcaAATGTATGCTGTATTTGTTACACATTAATCATAATTCATAATCATTTCCTGCACACTGGATATTCTCAAATGTTGtacaaaaatgtgaaagaataatgaaagaaaagaacattgtAGCATGCAGTTAGTACTTCTGGTCAGTTGATTTCACAGTAACGGTAGTGGTTGCCTACTGATCCTATCTATCATACTGTGCATCCTTTGCATAATCTgttcaggaaaaataaatagCTGCAGGCATATAATCTGTGTTCCTATCTAAATGGGATACACCCATGGATGGCTCGTATAAATGGACTAGCAGAGCTAAGCCTCCCTGtttttcaaagataaaaagacatcagcAAGGTTTAAATTTTGGTGcacacatcagattatttgatgttaacaaatgttttaaaataaaataattttgggACTTTGCTCCACTAAAGTGccacagcaccaccaatggttttaagaataaaaagtacagaatggtatgaagaagcaagGATTGGGCTGATTACTTTgcagcccagactgtagattcatgcagcctattaGTCATAGTTGTGTTGggtgattacacagaatgaCACACCCCCAAGATTTGCTCTCCATTTGGGCTGGTACAGTCTCAGGCATAATGAACAAAGtgaattatttactctatcatcttTTTTGCCCAAAATGCATTtgaaggagaaactaaaagtagatagaccGAGCACACATCGTACAATCagagtacaaattacacaacagtaaaataataataataataataatactttcaTATATTGTCTTAAATGATTGTaggatataaaaacaaaacgaaCATTTTATGACTTGGTATTAAAGATTAATGATTGAACTCTATAAATGAACTCCATCTTGTTTTCAGAAACCACAACAGTTATATTGCTTCTATATATTACCACTATTCAACTAATGAATTTGTGACGGTATTATGTGATATTAGAAGAAAACCTGCTCTTTTGAAATCACTGTgaagttttaattaaatcttCAAGTATTCAAGGTCAAAAGatctatttaacaaaaatatgtacaaaacaTGTACATTTAGGTTTATAGAAtttcagaagaaagaaaagaaagaaatgtaggAAGTCATGCTCTGAAGGATTgtttttcatataaatatttgtccttttttttggtACTTCTTGTTGCAAGGAAATTGTGAttgttgtaaatgtttataataaaaaggaaaagaaatcttA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU459288 False 1751 lncRNA 0.35 3 15354550 15361017
XM_034300493.1 True 2004 mRNA 0.35 4 15354360 15361054

Neighbor

gene id symbol gene type direction distance location
hspb2 hspb2,LOC107691741,LOC107721646,LOC107603202 coding upstream 637 15350540 ~ 15353723 (+)
c27h11orf1 c28h11orf1 coding upstream 7451 15343638 ~ 15346909 (+)
mia mia,LOC107691742 coding upstream 10790 15341706 ~ 15343570 (+)
crfb12 NA coding upstream 23337 15321665 ~ 15331023 (+)
si:dkey-71l1.1 tomm40l,si:dkey-71l1.1,LOC108259972,LOC103030645,LOC107691796,LOC107745123,LOC107603199,LOC107663776,LOC107574698 coding upstream 33003 15314107 ~ 15321357 (+)
fzd9a fzd9,LOC108260460,LOC108428763,LOC106567714,LOC105023973,LOC106612580 coding downstream 15594 15376648 ~ 15379250 (+)
mrm1 mrm1 coding downstream 44785 15405839 ~ 15410281 (+)
lhx1b lhx1,lhx1b,LOC107728209 coding downstream 82459 15443513 ~ 15469589 (+)
aatf aatf,LOC107695156,LOC107730321,LOC107600606 coding downstream 109388 15470442 ~ 15485758 (+)
LOC117596224 NA coding downstream 388316 15749370 ~ 15754438 (+)
G387388 NA non-coding upstream 84451 15266107 ~ 15269909 (+)
G387386 btg4,LOC107745130,LOC107556417 non-coding upstream 136250 15215977 ~ 15218110 (+)
G387383 NA non-coding upstream 146463 15205754 ~ 15207897 (+)
LOC113531625 NA non-coding upstream 149478 15182313 ~ 15204882 (+)
G387208 NA non-coding upstream 418318 14934704 ~ 14936042 (+)
G387504 NA non-coding downstream 9508 15370562 ~ 15370773 (+)
G387513 NA non-coding downstream 29565 15390619 ~ 15390835 (+)
LOC117596225 NA non-coding downstream 362791 15723845 ~ 15731883 (+)
G387659 NA non-coding downstream 409990 15771044 ~ 15771244 (+)
G387675 NA non-coding downstream 436540 15797594 ~ 15803923 (+)
sik2a sik2 other upstream 80281 15245005 ~ 15274079 (+)
c27h11orf88 c28h11orf88 other upstream 120668 15163384 ~ 15233692 (+)
G386325 NA other upstream 1526212 13825850 ~ 13828148 (+)
G386294 NA other upstream 1530305 13821788 ~ 13824055 (+)
zgc:63972 LOC108260458 other upstream 2553443 12790901 ~ 12800917 (+)
fkbp6 fkbp6 other downstream 304 15361358 ~ 15367247 (+)
LOC113531170 nyap1,LOC108259934,LOC101885998,LOC107596102 other downstream 446495 15807549 ~ 15859905 (+)
LOC113531248 NA other downstream 673769 16034823 ~ 16038605 (+)
si:ch211-284e13.4 LOC108260367,LOC108427482 other downstream 716035 16077089 ~ 16096184 (+)
lrch2 lrch2,LOC107746375,LOC107700248 other downstream 781888 16142942 ~ 16210315 (+)

Expression


Co-expression Network