LOC113531241 (ins,LOC108259786,LOC108259964)


Basic Information

Item Value
gene id LOC113531241
gene name ins,LOC108259786,LOC108259964
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 16655669 ~ 16657113 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU460111
TGATTTCAAATGAAGTTCTCTGAATGCATGCTGAAAGGAGTATGTTTGCGCAATTTTCGAAGAATTGGAAACTCAAGTCTGTTCAGGCGTAAAAGTGAATTAGCTAGAACAAACGTAGCTAATGTGGCATGTGTGATTGGACAGCCACTTAACAGCATTAGAGGCTGTGCAAGTGCGGTGCGTTTTTTCCGCTGACTCGGACAAAGCAAGCCTGCTCAGGTATAAAGGTGGAGAAGAGCCACTGTTCGTCCTCAACCATCTCTTTTCTCTCAGCATCTCTGACCACCTTCACAGGGCGTCTCCTCTGTCTACTAACGCAGaCAATGGCGGTTTGGCTCCAGGCTGGTGCTCTGCTGTTCTTGCTGGCGTTCTACACTGCAGGAGCCAATGCTGCGGCACCCCAACACCTATGTGGTTCTCACCTGGTTGACGCCCTATACCTAGTCTGCGGCCCAAATGGGTTCTTCTACAACCCTAAAAGAGAGGTGGATCCTCTGCTGGGGTTCCTTCCCCCTAAATCTGCTCCAGAGGGCGAGTTGGCTGAATACCCATATAAAGATTACAGTGAGCTGATGGTGAAAAGAGGCATTGTGGAGCTGTGCTGCCATAAACCCTGCAGCTTACATGACCTGCAAAACTACTGCAACTAAAACACCAGCATGGCCACCACCATAAACTCTCCCAACACCTGCTGCAAATGAGACAATGGCCTACTTGattatggggttttttttcctagaaaataaaagtatttcaaaTGAAA
>XM_026921819.2
TCTCTCAGCATCTCTGACCACCTTCACAGGGCGTCTCCTCTGTCTACTAACGCAGaCAATGGCGGTTTGGCTCCAGGCTGGTGCTCTGCTGTTCTTGCTGGCGTTCTACACTGCAGGAGCCAATGCTGCGGCACCCCAACACCTATGTGGTTCTCACCTGGTTGACGCCCTATACCTAGTCTGCGGCCCAAATGGGTTCTTCTACAACCCTAAAAGAGAGGTGGATCCTCTGCTGGGGTTCCTTCCCCCTAAATCTGCTCCAGAGGGCGAGTTGGCTGAATACCCATATAAAGATTACAGTGAGCTGATGGTGAAAAGAGGCATTGTGGAGCTGTGCTGCCATAAACCCTGCAGCTTACATGACCTGCAAAACTACTGCAACTAAAACACCAGCATGGCCACCACCATAAACTCTCCCAACACCTGCTGCAAATGAGACAATGGCCTACTTGattatggggttttttttcctagaaaa

Function

symbol description
ins Predicted to enable hormone activity. Acts upstream of or within several processes, including negative regulation of feeding behavior; positive regulation of pancreatic A cell differentiation; and type B pancreatic cell differentiation. Predicted to be located in extracellular region. Is expressed in several structures, including blood plasma; dermal bone; digestive system; endocrine cell; and endoderm. Human ortholog(s) of this gene implicated in diabetic retinopathy; glucose metabolism disease (multiple); insulinoma; and pancreatic cancer. Orthologous to several human genes including INS (insulin).

GO:

id name namespace
GO:0031667 response to nutrient levels biological_process
GO:0009749 response to glucose biological_process
GO:0006006 glucose metabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU460111 True 763 TUCP 0.48 3 16655669 16657113
XM_026921819.2 False 478 mRNA 0.51 3 16655934 16657093

Neighbor

gene id symbol gene type direction distance location
panx1b LOC108437068 coding upstream 1181 16648367 ~ 16654488 (+)
epd NA coding upstream 8248 16643263 ~ 16647421 (+)
myo1ca LOC108437060,LOC107746384,LOC107548455,LOC107663411 coding upstream 32370 16593426 ~ 16623299 (+)
dpf2 dpf2,LOC107734150,LOC107596122,LOC106916658,LOC100692623 coding upstream 80665 16562210 ~ 16575004 (+)
LOC113531476 LOC108259843,LOC107746380,LOC107596124,LOC558044,LOC108437058 coding upstream 127092 16454172 ~ 16528577 (+)
tmprss4b LOC108259861 coding downstream 125636 16782749 ~ 16788901 (+)
pafah1b2 pafah1b2,LOC108437041,LOC107734127,LOC107599209,LOC107661198,LOC107746392 coding downstream 164188 16821301 ~ 16827209 (+)
apoa1a apoa4 coding downstream 172869 16829982 ~ 16831949 (+)
LOC113531227 NA coding downstream 185935 16843048 ~ 16845555 (+)
LOC113531226 NA coding downstream 189179 16846292 ~ 16850311 (+)
G388145 NA non-coding upstream 206002 16449464 ~ 16449667 (+)
G387973 NA non-coding upstream 294668 16350041 ~ 16361001 (+)
G387939 c28h10orf76,cunh10orf76,zgc:63733,cssa12h10orf76,LOC107551381 non-coding upstream 434850 16218765 ~ 16220819 (+)
G387938 NA non-coding upstream 437438 16217763 ~ 16218231 (+)
G387937 NA non-coding upstream 438002 16217037 ~ 16217667 (+)
LOC113531478 NA non-coding downstream 11892 16669005 ~ 16670716 (+)
G388236 NA non-coding downstream 194275 16851388 ~ 16856409 (+)
G388276 NA non-coding downstream 342623 16999736 ~ 17002362 (+)
G388463 NA non-coding downstream 378346 17035459 ~ 17036456 (+)
G388468 NA non-coding downstream 390290 17047403 ~ 17057491 (+)
cdc42ep2 LOC108259851 other upstream 100123 16546110 ~ 16555546 (+)
lrch2 lrch2,LOC107746375,LOC107700248 other upstream 445354 16142942 ~ 16210315 (+)
trnam-cau_49 NA other upstream 507237 16148360 ~ 16148432 (+)
si:ch211-284e13.4 LOC108260367,LOC108427482 other upstream 559485 16077089 ~ 16096184 (+)
LOC113531248 NA other upstream 617064 16034823 ~ 16038605 (+)
LOC113531069 LOC108259908,LOC108260251 other downstream 620740 17277853 ~ 17280577 (+)
rpl36a LOC100304549,LOC100219516,LOC106514001,LOC103353280,LOC100690460 other downstream 624876 17281989 ~ 17289481 (+)
vma21 vma21,LOC108442053 other downstream 684305 17341418 ~ 17344855 (+)
radx LOC108259901 other downstream 733753 17390866 ~ 17412842 (+)
hmgn7 hmgn7,LOC108260037,LOC107672554,LOC108442050,LOC107756557,LOC103026953 other downstream 798381 17455494 ~ 17461069 (+)

Expression


Co-expression Network