G388236


Basic Information

Item Value
gene id G388236
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 16851388 ~ 16856409 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU460179
GTCTTGACGAACAtagttttattctttctttttttttttttagttgtctAAGGAAGCATATgtgaagaaggaaggaagattaATCAGGCCAAAGGAATTCCTCAGGCATCCTACTGTGGTCAAAGATAAGAAAAGTGGATTAGGAAGGAAAAGGAAGGCTGGAGTAAAGAAAGGCAGAGGGATGATGTAAACAGATGGAGTTTGGTTGATGGATATGGGAGGGAGAAGACTAGGAATCCAGGAGACCCCACTTTGACAGGTTTATGACTCAGTTTTCAGAAATGACGAAACAAGGAAGTGATGGAGGACTCACCCTCCCAGAGGTCCACCGTCTGGAACATGTCGGATTTGGTGACTCCGTATTTCTCAGCAGCTGCGAGGAACTGTGAGATCAGCTCCATCTGCTTGAAGGCCATGGTGGAGCTCTGGATCCTCTTCACTGGTTTCAGGTCCTTATGGAGGCTGTTAATGAGCTCACACAAGACCTGCAGACACGacggaggagagagaaagagtgatggatggagagagtaGAGGCTTTTTATCTTTtcattacagtaaatattacTTTGTCGGATAGTTTAATTATCTGTGTTTTACTATTGCAAAAAAgtactaatgaaaaaaaattt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU460179 True 632 lncRNA 0.42 2 16851388 16856409

Neighbor

gene id symbol gene type direction distance location
LOC113531226 NA coding upstream 1077 16846292 ~ 16850311 (+)
LOC113531227 NA coding upstream 5833 16843048 ~ 16845555 (+)
apoa1a apoa4 coding upstream 19439 16829982 ~ 16831949 (+)
pafah1b2 pafah1b2,LOC108437041,LOC107734127,LOC107599209,LOC107661198,LOC107746392 coding upstream 24179 16821301 ~ 16827209 (+)
tmprss4b LOC108259861 coding upstream 62487 16782749 ~ 16788901 (+)
ftr84 LOC108259858,LOC108437047 coding downstream 20155 16876564 ~ 16882312 (+)
LOC113531215 NA coding downstream 77273 16933682 ~ 16939819 (+)
h3f3c h3f3b,H3F3A,LOC105909691,LOC107572204,LOC107388308,LOC101073377,LOC105891059 coding downstream 88187 16944596 ~ 16950045 (+)
kptn kptn coding downstream 120080 16976489 ~ 16981615 (+)
hnrnpl LOC108260116,LOC108437052,LOC103047348 coding downstream 125787 16982196 ~ 16993865 (+)
LOC113531478 NA non-coding upstream 180672 16669005 ~ 16670716 (+)
G388145 NA non-coding upstream 401721 16449464 ~ 16449667 (+)
G387973 NA non-coding upstream 490387 16350041 ~ 16361001 (+)
G387939 c28h10orf76,cunh10orf76,zgc:63733,cssa12h10orf76,LOC107551381 non-coding upstream 630569 16218765 ~ 16220819 (+)
G387938 NA non-coding upstream 633157 16217763 ~ 16218231 (+)
G388276 NA non-coding downstream 143327 16999736 ~ 17002362 (+)
G388463 NA non-coding downstream 179050 17035459 ~ 17036456 (+)
G388468 NA non-coding downstream 190994 17047403 ~ 17057491 (+)
G388514 NA non-coding downstream 314044 17170453 ~ 17170679 (+)
G388508 LOC108260001,LOC103044679,LOC106528523,LOC108251252,LOC108243110,LOC107386326,LOC101165333 non-coding downstream 337915 17194324 ~ 17202617 (+)
LOC113531241 ins,LOC108259786,LOC108259964 other upstream 194275 16655669 ~ 16657113 (+)
cdc42ep2 LOC108259851 other upstream 295842 16546110 ~ 16555546 (+)
lrch2 lrch2,LOC107746375,LOC107700248 other upstream 641073 16142942 ~ 16210315 (+)
trnam-cau_49 NA other upstream 702956 16148360 ~ 16148432 (+)
si:ch211-284e13.4 LOC108260367,LOC108427482 other upstream 755204 16077089 ~ 16096184 (+)
LOC113531069 LOC108259908,LOC108260251 other downstream 421444 17277853 ~ 17280577 (+)
rpl36a LOC100304549,LOC100219516,LOC106514001,LOC103353280,LOC100690460 other downstream 425580 17281989 ~ 17289481 (+)
vma21 vma21,LOC108442053 other downstream 485009 17341418 ~ 17344855 (+)
radx LOC108259901 other downstream 534457 17390866 ~ 17412842 (+)
hmgn7 hmgn7,LOC108260037,LOC107672554,LOC108442050,LOC107756557,LOC103026953 other downstream 599085 17455494 ~ 17461069 (+)

Expression


Co-expression Network