radx (LOC108259901)


Basic Information

Item Value
gene id radx
gene name LOC108259901
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 17390866 ~ 17412842 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU460595
CTCATAAGTGCAGAgatcttcatttattcatgtttgcattttacaatctttatcatatatatatatatttatatttatatatgtgtgtatataggaaaaaaaaaggagggcgAGCCTGCAGTGACACTGGAGTGACACGAAGAGTTCTGGAGTGCAGAAGGgcagaaagaaaagagcagcGCTTTCTGATGGAGAAGTCTCAGTGCAACTTCCACTTCACTCAGCAGGGCGGAGAGCAGGGCGGGAAATAAGTGCCCTAAACCACAGTGAAGCCCAGGAgaacggacacacacacacacacacacacacacacacacacacacacgtgtatatatATGCAATCGTACATATGATGCTGGAGATGCTTTAAATTCGGTCCACAGTGGAGTTTAAAATATGAGGACATTCTACATCACGGAAACGTAAAggacagaaagtgtgtgtgtgtgtgtgtgtgtgtttgtgttaagttTTTCAATAGTCTGTACAATttacactgttaaaaataattacattcgACTCGATTCAGGTACGTCCCCCAGCCGTTCTATTCACACGGTGATGGAATGTGAATACAGTAGAACACTATGAGAAAAGCTGCGTGGAAAACACATCAGTAAATACATTTCACACAACGTTGATGTGGACTCGAGCGTAGACGCAGAATTTCCCCCTCCGATCAAGTCAACATACAGAATTAAACAGAAATGATCCACATTCATTTCAGCAAAGCTCAGttttaacacaacacaca
>XM_034300806.1
TGAATTTCATACACGAAGAAGAGACCAAACTGTTCGGCGCTAATAAAACCCGGAAGTAaatagtttgtttttctttacaaGTTTGGTTTATCTGAGTATACAGTTAAGAAGCTGGGTTTATTGTTATATAGAATGGGTTAATAACTAAAcattaaatgtgcatttttttcttttgttgaataaaatgtaagaatATGTGAGATAAATAGTTGAGTTATAACGGAGCTGGTAACAGAAGTCAGGATTAGCCGCTGTGAGGAAGCTAATGTTATGTAAGCTAATGTTTCAGGCTCGGTTCTGGCTGAATGGCGAACCGGAAGAATTCTGAGTCTGGGGGTGAGTCTGAGTTGTTGTCTGCTTTAGAGCAGCTCAGCTCGTCCAGGACGCTCCGCTTTAAACCCGTTTCCCCGCTGCGTGTCGCCGTGCTCGCGCTTGACCGCTATCTGGTTGACGCGCGCGCCGCTCCCGACAGCGACAGCAACAGCTACAGCTACGACGTGACGATCACCGACGGAACATGGCGCGTGAAGTGCTGGCTGGCGCCGGGACTGAACCGCATGGTCCAGGTGAACTCTCTCCGGTGCGGGTCGCGCGCTCTGATCGCGCACCTGTCTCTTGTTCACGACGAGACGCGGCTCCGgcgcagctgtgtgtgtatagaggAGGCGCGATCCGATTCCTCCGATCCCGATATTTTACTCGCGATAAAAGACCCGGATGCGATACGGTGGTGGACGCACGAGTCTGTCGGTTCTTCTGTGATGCCTCTCGCTGATGTTCCTCTGCAGTACAACAGAAGACATTACTTATCGCTGTGGAACAATGAAGATCCGCACGGCGCGCTGTGGCTTCCCTTCACTCCTCCACCGGATGTAGCGATAGACGtatcTAAGATTTCTCTTCTGGGAGATTTGGATGTGTTCTTGGCCTCATCCAGAAGGCCGTTTCCTCTGCTGGTCCGAGTGCTGCACAGATCTCGTTTAAGGTACTACGGAAAACCTGGACAAAACATCGACTTCCCCTTTCAGgCGTACTTCGAGGTGGCTGATCAGAGCGGAGTCATGTCCATGGTCCTGTGGAATGACCTGTGTCCGGAGTGGTATCAGCGGCTGGTGGTGGGTTCAGTTCTTTACCTGCAGCATTACAAACTGAAACGCAGCTACCAGAACCGCTCCAGACCTCAGCTCAGCACGCTGCCTCTCATCTCCTTCAGCTCCACAGAGATCTGCTTGAACCCTCGAAGTCCGTCAGCCGTCATCACTGTGATTCCTCCTAAAAGCGTTCAGCCTCAATGGAGCTTACCCGAGGTCACCTACAATTTCTctaccagATGTGAAGTCGAGAGTCTGGCCAGGAACCAGGCCTGTGACATCATCGGCCTGGTGACGTACGTCAGCCGCGTCGAGCGAATCAGAAACAGAGCAAATACAGtcccGGAGAAGTTCTGGACGTACCGGTGGGTTCATGCAGTGGATGGAACCTCAGACTCTCCCTTCATCCTGGAGATTTTTGCCTCTTCTCAGCCCGAGATCTTTAACAACATCTCTCCCATGACGTATGTCGTGTGTACTCACATGCGTGTGTGTCGGGAGACGGGTTCTGCTCTTTACCTGACCAGCAGCACAGAGACTCAGCTCTTCGTCACAGGCTGCCACAGGAAACAGCCGTATGTGTCTGACCCGAAGGTCAAAGCCTTCATCCAGTGGACGAAGACTCTGAAGGACAGTGTAGTACTGAGGAAGACCACAGTGGGGGGGCAGTACTGTTACCCCCCTCCCCCACCCACCTTCACACCAAATACCACCAGCAACGGAGCGAGTGAAGGAGCGTCTCCATCGTTAATGGCCGTAGGAGACCTACGGAAGGAGCTAGAGAGTCTGCAGTATCGAGAACACAGGAGAGTGGCAGTACAGGGCCACATCACTGCTGTGCAATACCACCGGTGGCCACCGGAGGCGCCTCACACCACGCCTCAGAGCGAACAACGACCGGTGGAGCATGACCCAGTGGGCGTGGCCAGAGGCTCCACCTCTTCCTTTGGCACCGGAGCACAGCGACAGGGCGAGACGTCCTCGGCGTCGTCACGAAGTGAAGTCGCAAATTCTCCTAAGCGGAGGAGAGTTGAGCAagGAGTGCAGAGGCAGTACTGGACCAGAGCCAAGCGGCAGTTAGAaagaCAGGTAAAGCCAGCAGATCTTCATGAGGATGAGGAGACCAAAAGAAGGTCTGATGAAGAGGACAGTGAAGGACTTTCCACGCCGTCACCTCAGCCTGCAGACAACAGTGAGACAGGAAGCCCCCCCGACACACAGCAATCTTCCACTCAGCCTGTTGCATCATGGGAGAGCAGCGCGTGGCCGTTACTTAAGCAGGACGTCACGGATCACGTGCGCTGCGCCTCTCTGGATCGTGAGAGTGTTCCGGAAAAATTCCGATTCGACGACCGAGACGTGCTCCTACACAGGGTCAACCTCAGCCCCGCGAAGTGGAGCCCGGACCTTCCATCAGACACCAACtcggacacacacactcctgtaaacTTCACAGGATACCTCACTCTCACATTACTGGGGTTAAATCAGCAGGCAGCGGTCGACTCCCTCTTCCTCCCCGTGTTTTGTGCCGAGGATCCGCGGGCAGTAGGGACGTCCTACGGTCTCCATGACAACACACTGATGTCATGCCTTTCCACAGGTCGTGTCTGTACTCAGGCCAACTTttcaccagAGACATTATTGAGCTCGGCATCGGCTCTGGAGGACGAgcgcgtggtgtgtgtgttggacgtGTGTCTGCTGGGTGAGAACCGGCTGGAGATGATCTGCTCTAAAGTGTACAGGACAGCAGATATCATCACTCCTGTgaaaaaaaaaggagggcgAGCCTGCAGTGACACTGGAGTGACACGAAGAGTTCTGGAGTGCAGAAGGgcagaaagaaaagagcagcGCTTTCTGATGGAGAAGTCTCAGTGCAACTTCCACTTCACTCAGCAGGGCGGAGAGCAGGGCGGGAAATAAGTGCCCTAAACCACAGTGAAGCCCAGGAgaacggacacacacacacacacacacacacacacacacacacacacgtgtatatatATGCAATCGTACATATGATGCTGGAGATGCTTTAAATTCGGTCCACAGTGGAGTTTAAAATATGAGGACATTCTACATCACGGAAACGTAAAggacagaaagtgtgtgtgtgtgtgtgtgtgtgtttgtgttaagttTTTCAATAGTCTGTACAATttacactgttaaaaataattacattcgACTCGATTCAGGTACGTCCCCCAGCCGTTCTATTCACACGGTGATGGAATGTGAATACAGTAGAACACTATGAGAAAAGCTGCGTGGAAAACACATCAGTAAATACATTTCACACAACGTTGATGTGGACTCGAGCGTAGACGCAGAATTTCCCCCTCCGATCAAGTCAACATACAGAATTAAACAGAAATGATCCACATTCATTTCAGCAAAGCTCAGttttaacacaacacacacgggCCCTGATTCAGTACTGTTCCTAACACACCATGACTCGCTTCCTCACGCCACTCCACGTTGATTAAATTCACTTTTAATGCAAGTGAAACTAGTTATAACATTCTCAAAGATTTACCAGTTTCAGAAGGTAAACCCTTTAAACCCAGCAACTAGAGTTGGTTAGAAATGTAAACAGAGCAATGAagtactttaaatatatatcatttCTGACAACTGTACATGTAGTTAGCAAGTCTGCTAATTAGCACACAAGCGAATGGACTGCACAAAACGGTGGCtgatcagaaaagaaaaacagtgaggGTGTGTTAAGGACagtactgaaacacacagacagtatttTTCCACCAGCACAGCGCCGAAGCCAGGGCTAGTCTGAAACAAACAGAACTGAAAATCCATCGCTAATGCTAACCTTTGAGCAGTTACAAAGAATCAAAACATATCCTGTGCACATTTCTGATCTTTTGTGTTCTGTATATAGATTCTGCATAAATTCTTGTGATGGGcgattcataaaaaaaaagattcgcTCATTTTGAGTGACACTCTCAGTAAAAAAGGCAAATCGATTCGGAAACATGAGAAAATGTGGATTAAACTGATCGTATTATACAAATATTGTAGAATAATATGAAACCATGAATGAGTCgtgaatcaaatgaataaaaaaaactaatcttTGATTCATTTTAAGGAGTCGTTTGAAAGATTTGAATCGCTTAAATTGATCATAATGCCCATCGCTAGCAAGAACGTGATCGACCCGAAATTTGAGCTAGAAACCATCCAGATCTGTTACTAATGGTTTAAATCTCAAATCAAAAAATCCACTTATCTTGATCTCAGTGTAATCCTGGcttctttaataatttattttacgTAAGACATCATTTTATAGAgtgacattagctagctaatcacTCTATTAGCTTGTTACATCTAGCTACTTCATTGACAACcgctgtatagtgtatagtatatataatatatatatatcgctaACCAGCTAGCTGTATTAAACAACATGTGTATGTTATGGAattgttagctaactagctgtgTAGCTATCGTACTCCCATGCAGACAGCACCTGGAACctattattatataaatcaattatttttaaCGATTTAAATATAAAGAGCCAATTAATTTAAATCTGGATCATTAGCATTTACGGCTGTGTGATTATAGCATGACGTTACCGCGACAGCGACGTGAAATTGTGGATAAATTCAGCTAGACAAACAGCTTCGGCTCCGTGTTGGTGGAAAAAAAGTCTAACAGATACTAAATTCAACTGAAAATTCTACAGAATCCTCGGAGTTACAGAATTTTCTTCTAAAAATTTTAGAATCCTTAGACTTTGAACTCAAACTTCTggtattttctaaaaaaaattttttgaaaCCATAGACATTCAAATCAGAGTTCTGGAATTTTCAAAAATTTTTAGAATCCTTGAGCTTTGAACTCAAACTTCtagaattttcaaaaaaaaaaaacaaaactgaatctGTGGACTTTCAACTCAGAGTTACAGAATTTTCATCTAAAAATTCTAGAATCCTCAGACCTTGACCTCAAAATTTTGgatttttctaaaaattttAGAATCCTTAGGCTTTGAACTCAAAATTCTagaattttctaaaaaaaaaaaaaaatttgaatctgAATCTTTCAAATCGGGGCTCTGTAATTTTCTAAGCACTCTAGAGTCCTTGGAGTTTGAACTCCCAGTTTGGGAATTTtctacaaatttaaaaatcctTGGACTTGAAACTCGGAGTTCCAGAATCTTCTAGATTCAAAATTCTTCGAATGTTGGACTGGAATTATCTAAAAAATTGTAGAACCCGagtaggcaaaaaaaaaaaa

Function

NR:

description
uncharacterized protein CXorf57 homolog isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU460595 False 754 lncRNA 0.41 1 17410201 17410954
XM_034300806.1 True 5411 mRNA 0.46 17 17390866 17412842

Neighbor

gene id symbol gene type direction distance location
npas2 LOC108259764,LOC108442046 coding upstream 1440 17349263 ~ 17389426 (+)
mtnr1c gpr50 coding upstream 52455 17330096 ~ 17338411 (+)
tnfsf10l4 LOC108259907 coding upstream 68615 17317866 ~ 17322251 (+)
LOC117596262 LOC108259908 coding upstream 113898 17275499 ~ 17276968 (+)
ckma ckma,LOC100304493,LOC108444028,LOC103045415,LOC107548480 coding upstream 321049 17064901 ~ 17069817 (+)
brwd3 brwd3,LOC107672566,LOC107680390 coding downstream 136751 17549593 ~ 17573276 (+)
chmp1b chmp1b,chm1b,LOC101476317,LOC106603331 coding downstream 163617 17576459 ~ 17581767 (+)
cnga2b LOC108443773 coding downstream 173249 17586091 ~ 17594361 (+)
nexmifa LOC108443769 coding downstream 223874 17636716 ~ 17651357 (+)
tbx5b NA coding downstream 347309 17760151 ~ 17766824 (+)
LOC117596270 NA non-coding upstream 61632 17327564 ~ 17329234 (+)
G388507 NA non-coding upstream 161622 17210017 ~ 17229244 (+)
G388508 LOC108260001,LOC103044679,LOC106528523,LOC108251252,LOC108243110,LOC107386326,LOC101165333 non-coding upstream 188249 17194324 ~ 17202617 (+)
G388514 NA non-coding upstream 220187 17170453 ~ 17170679 (+)
G388468 NA non-coding upstream 333375 17047403 ~ 17057491 (+)
G388619 NA non-coding downstream 161885 17574727 ~ 17620017 (+)
G388640 NA non-coding downstream 274162 17687004 ~ 17738681 (+)
G388656 NA non-coding downstream 338357 17751199 ~ 17751441 (+)
G388658 NA non-coding downstream 341735 17754577 ~ 17754895 (+)
G388890 NA non-coding downstream 387992 17800834 ~ 17801123 (+)
vma21 vma21,LOC108442053 other upstream 46011 17341418 ~ 17344855 (+)
rpl36a LOC100304549,LOC100219516,LOC106514001,LOC103353280,LOC100690460 other upstream 101385 17281989 ~ 17289481 (+)
LOC113531069 LOC108259908,LOC108260251 other upstream 110289 17277853 ~ 17280577 (+)
LOC113531241 ins,LOC108259786,LOC108259964 other upstream 733753 16655669 ~ 16657113 (+)
cdc42ep2 LOC108259851 other upstream 835320 16546110 ~ 16555546 (+)
hmgn7 hmgn7,LOC108260037,LOC107672554,LOC108442050,LOC107756557,LOC103026953 other downstream 42652 17455494 ~ 17461069 (+)
LOC113524235 atrxl,LOC108443772 other downstream 183353 17596195 ~ 17625334 (+)
LOC117596240 NA other downstream 188469 17601311 ~ 17601510 (+)
LOC117596208 prps1a,LOC107733231,LOC107672505 other downstream 246854 17659696 ~ 17662480 (+)
LOC113524245 prps1a,LOC107733231,LOC103031347,LOC107672505,LOC107597240,LOC108443767 other downstream 338697 17751539 ~ 17757365 (+)

Expression


Co-expression Network