LOC117596208 (prps1a,LOC107733231,LOC107672505)


Basic Information

Item Value
gene id LOC117596208
gene name prps1a,LOC107733231,LOC107672505
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 17659696 ~ 17662480 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU460676
AGTGTGCGAGTCGCGAGCAGAGCTCAGTCCTGTAGTGCTCTTGTccgtttttatttcatcttttctctcagatttgCGGTGTTTTTCAGACCCTGCCGTCCCTCTCAGGCACCATTGAGCCTCCGGAGCAGCCGAGAATGCCGAACATCAAGATTTTCAGCGGCAGTTCGCATCCGGATCTCTCGCAGAAGATTGCTGATCGGTTGGGACTGGAGCTCGGGAAGGTGGTGACGAAAAAATTTAGCAACCAGGAGACATGcgtAGAGATCGGGGAGAGTGTGCGTGGAGAAGACGTGTACATCATCCAGAGTGGGTGTGGTGAGATAAATGACAATTTGATGGAGTTGTTAATCATGATAAACGCCTGTAAAATTGCCTCAGCGTCCCGAGTGACGGCCGTCATCCCCTGCTTCCCCTACGCCCGCCAGGACAAGAAGGATAAGG
>XM_034300483.1
TGACGTCTGACTCCTCGCGCTGTAGGGCTGTCAGTGTGCGAGTCGCGAGCAGAGCTCAGTCCTGTAGTGCTCTTGTccgtttttatttcatcttttctctcagatttgCGGTGTTTTTCAGACCCTGCCGTCCCTCTCAGGCACCATTGAGCCTCCGGAGCAGCCGAGAATGCCGAACATCAAGATTTTCAGCGGCAGTTCGCATCCGGATCTCTCGCAGAAGATTGCTGATCGGTTGGGACTGGAGCTCGGGAAGGTGGTGACGAAAAAATTTAGCAACCAGGAGACATGcgtAGAGATCGGGGAGAGTGTGCGTGGAGAAGACGTGTACATCATCCAGAGTGGGTGTGGTGAGATAAATGACAATTTGATGGAGTTGTTAATCATGATAAACGCCTGTAAAATTGCCTCAGCGTCCCGAGTGACGGCCGTCATCCCCTGCTTCCCCTACGCCCGCCAGGACAAGAAGGATAAGGTGGGGGTGAGAGAGCCAgcttactaacacacacacacacacgcacacaca

Function

symbol description
prps1a Predicted to enable ATP binding activity and ribose phosphate diphosphokinase activity. Predicted to be involved in 5-phosphoribose 1-diphosphate biosynthetic process and purine nucleotide biosynthetic process. Predicted to act upstream of or within nucleobase-containing small molecule metabolic process and phosphorylation. Predicted to be part of ribose phosphate diphosphokinase complex. Predicted to be active in cytoplasm. Is expressed in several structures, including alar plate midbrain region; immature eye; nervous system; notochord; and yolk syncytial layer. Used to study Charcot-Marie-Tooth disease X-linked recessive 5. Human ortholog(s) of this gene implicated in Arts syndrome; X-linked deafness 1; X-linked recessive disease (multiple); gout; and retinitis pigmentosa. Orthologous to several human genes including PRPS1 (phosphoribosyl pyrophosphate synthetase 1).

GO:

id name namespace
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0004749 ribose phosphate diphosphokinase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU460676 False 444 TUCP 0.52 2 17659728 17662430
XM_034300483.1 True 526 mRNA 0.53 2 17659696 17662480

Neighbor

gene id symbol gene type direction distance location
nexmifa LOC108443769 coding upstream 8339 17636716 ~ 17651357 (+)
cnga2b LOC108443773 coding upstream 65335 17586091 ~ 17594361 (+)
chmp1b chmp1b,chm1b,LOC101476317,LOC106603331 coding upstream 77929 17576459 ~ 17581767 (+)
brwd3 brwd3,LOC107672566,LOC107680390 coding upstream 86420 17549593 ~ 17573276 (+)
npas2 LOC108259764,LOC108442046 coding upstream 270270 17349263 ~ 17389426 (+)
tbx5b NA coding downstream 97671 17760151 ~ 17766824 (+)
cfap73 NA coding downstream 109831 17772311 ~ 17777678 (+)
LOC113524247 NA coding downstream 142310 17804790 ~ 17807771 (+)
LOC113524211 NA coding downstream 147166 17809646 ~ 17814029 (+)
LOC113524212 NA coding downstream 152349 17814829 ~ 17817226 (+)
G388619 NA non-coding upstream 39679 17574727 ~ 17620017 (+)
LOC117596270 NA non-coding upstream 330462 17327564 ~ 17329234 (+)
G388507 NA non-coding upstream 430452 17210017 ~ 17229244 (+)
G388508 LOC108260001,LOC103044679,LOC106528523,LOC108251252,LOC108243110,LOC107386326,LOC101165333 non-coding upstream 457079 17194324 ~ 17202617 (+)
G388514 NA non-coding upstream 489017 17170453 ~ 17170679 (+)
G388640 NA non-coding downstream 24524 17687004 ~ 17738681 (+)
G388656 NA non-coding downstream 88719 17751199 ~ 17751441 (+)
G388658 NA non-coding downstream 92097 17754577 ~ 17754895 (+)
G388890 NA non-coding downstream 138354 17800834 ~ 17801123 (+)
G388895 NA non-coding downstream 159236 17821716 ~ 17873548 (+)
LOC113524235 atrxl,LOC108443772 other upstream 34362 17596195 ~ 17625334 (+)
LOC117596240 NA other upstream 58186 17601311 ~ 17601510 (+)
hmgn7 hmgn7,LOC108260037,LOC107672554,LOC108442050,LOC107756557,LOC103026953 other upstream 198627 17455494 ~ 17461069 (+)
radx LOC108259901 other upstream 246854 17390866 ~ 17412842 (+)
vma21 vma21,LOC108442053 other upstream 314841 17341418 ~ 17344855 (+)
LOC113524245 prps1a,LOC107733231,LOC103031347,LOC107672505,LOC107597240,LOC108443767 other downstream 89059 17751539 ~ 17757365 (+)
tpcn1 tpcn1,LOC107733226 other downstream 120445 17782925 ~ 17800017 (+)
gab3 gab3 other downstream 433686 18096166 ~ 18143123 (+)
G389305 NA other downstream 1033328 18695808 ~ 18769458 (+)

Expression


Co-expression Network