G388656


Basic Information

Item Value
gene id G388656
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 17751199 ~ 17751441 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU460700
ctgctctctctctctctctctctctctctccacacacaccttttcaaacactcctctctctctctctctctctcacacacacacacacacacacacacatgcacactgtttctctctctctctctctctctctcacacacacacacacacaccgcacactgtttctctctctctctctctctctctccctctctctctcacacacacatactgtctctctctctctctctctctctctctcac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU460700 True 243 lncRNA 0.50 1 17751199 17751441

Neighbor

gene id symbol gene type direction distance location
nexmifa LOC108443769 coding upstream 99842 17636716 ~ 17651357 (+)
cnga2b LOC108443773 coding upstream 156838 17586091 ~ 17594361 (+)
chmp1b chmp1b,chm1b,LOC101476317,LOC106603331 coding upstream 169432 17576459 ~ 17581767 (+)
brwd3 brwd3,LOC107672566,LOC107680390 coding upstream 177923 17549593 ~ 17573276 (+)
npas2 LOC108259764,LOC108442046 coding upstream 361773 17349263 ~ 17389426 (+)
tbx5b NA coding downstream 8710 17760151 ~ 17766824 (+)
cfap73 NA coding downstream 20870 17772311 ~ 17777678 (+)
LOC113524247 NA coding downstream 53349 17804790 ~ 17807771 (+)
LOC113524211 NA coding downstream 58205 17809646 ~ 17814029 (+)
LOC113524212 NA coding downstream 63388 17814829 ~ 17817226 (+)
G388640 NA non-coding upstream 12518 17687004 ~ 17738681 (+)
G388619 NA non-coding upstream 131182 17574727 ~ 17620017 (+)
LOC117596270 NA non-coding upstream 421965 17327564 ~ 17329234 (+)
G388507 NA non-coding upstream 521955 17210017 ~ 17229244 (+)
G388508 LOC108260001,LOC103044679,LOC106528523,LOC108251252,LOC108243110,LOC107386326,LOC101165333 non-coding upstream 548582 17194324 ~ 17202617 (+)
G388658 NA non-coding downstream 3136 17754577 ~ 17754895 (+)
G388890 NA non-coding downstream 49393 17800834 ~ 17801123 (+)
G388895 NA non-coding downstream 70275 17821716 ~ 17873548 (+)
G388966 NA non-coding downstream 268366 18019807 ~ 18075992 (+)
G388968 NA non-coding downstream 327489 18078930 ~ 18079378 (+)
LOC117596208 prps1a,LOC107733231,LOC107672505 other upstream 88719 17659696 ~ 17662480 (+)
LOC113524235 atrxl,LOC108443772 other upstream 125865 17596195 ~ 17625334 (+)
LOC117596240 NA other upstream 149689 17601311 ~ 17601510 (+)
hmgn7 hmgn7,LOC108260037,LOC107672554,LOC108442050,LOC107756557,LOC103026953 other upstream 290130 17455494 ~ 17461069 (+)
radx LOC108259901 other upstream 338357 17390866 ~ 17412842 (+)
LOC113524245 prps1a,LOC107733231,LOC103031347,LOC107672505,LOC107597240,LOC108443767 other downstream 98 17751539 ~ 17757365 (+)
tpcn1 tpcn1,LOC107733226 other downstream 31484 17782925 ~ 17800017 (+)
gab3 gab3 other downstream 344725 18096166 ~ 18143123 (+)
G389305 NA other downstream 944367 18695808 ~ 18769458 (+)

Expression


Co-expression Network