LOC113524245 (prps1a,LOC107733231,LOC103031347,LOC107672505,LOC107597240,LOC108443767)


Basic Information

Item Value
gene id LOC113524245
gene name prps1a,LOC107733231,LOC103031347,LOC107672505,LOC107597240,LOC108443767
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 17751539 ~ 17757365 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU460701
gtgtgtgtgcgtgtgtgtgcgtgtgtgtgtgtagggtgacCTCCATAGCGGATCGTCTGAACGTGGACTTCGCCCTGATCCATAAGGAGAGGAAGAAGGCGAACGAAGTGGACCGCATGGTTCTGGTCGGGGATGTCAAAGACAGAGTCGCCATCTTAGTGGACGACATGGCGGACACCTGCGGGACAATCTGCCACGCCGCGGAGAAgttAGTCTCTGCAGGTGCGACTAAAGTCTACGCCATTCTGACACACGGTATCTTCTCTGGACCTGCGATCTCCCGCATAAACAACGCCAACTTCGAGGCGGTGGTCGTGACGAACACTATTCCTCAAGAGGACAAGATCAAACAATGTGACAAGATCCAGGTGATCGACATCTCGATGATTCTGGCTGAAGCGATCAGACGAACCCACAACGGAGAGTCGGTGTCCTACCTGTTCAGCCACGTacctttataacacacacacacactctttacacacacatacactcgtATACACTTCCTTGTCggtatttaaatataaaaacgaATATATTAACCTAAGAAATGATAACTATCTTCATCACGCACTTGGATTGTAAACGTGTCCCTCGTTCCCCGAGTAGACGTCTGGCTTTAATTAAATAGTTTTACGATGTTTTGTACCGACGTGTTTTGATGGTACGTGAACAGAACTCTGGGTTTGCTCCAAAATAACAagcgttattattattattattattattattattattatacatgaCGGAATTTATGTAGCGCTGCCTGAAAACTCTCCCTAACTAGGCAGCGTCATTCTGAACAGAACACGCCCTTTATCGCGACGTTATTTTACAGTGTTGCGTATTCACGCCTAAGCTGGAGTTGAATGTCACTCAACGTCGCTCATTTAACGCTTGTTTCGGAAAGAATATAAATCGGGTGTGAATctgatacagtgtgtgttacgcGTATGTGATCTGTAAATTATCAGTTTATGGATGAACGTTACAGACGTGCAATGCATCATGACATCGTTCAGTTCACTCTCATCGTTTCGTTGCTTCCCAGGCTAACGTAGCTAACGTAGCTatctgattaaaatatattaagattaaaaatctttttcttaCGTCGAAATCTTTAAACACTCCTAAAAGCGCACTCCTTATTCGCAACTGCGTATTTAAGAAGAAATTTATTATCAGTACCACGTCCTGTTTTCCTCTCGAGTTCCAGTTTGAAACTTGAGTAGTAGGCGGAGCCTTAGTGGGCGGAGTTATACCATAAACGAAATTCCAGTATAGACCTAAACTACTGCTGCGTGACATCGGAACtcggaattacgtcatttttCATTTCCGAGCTACAAAGCGAGGGacaaaaacatggacgccttcACGATGCTGACGTATTTAGTTAGCTACAAGCTAGCCAGCTGACTTGTGACGAGTGACGCGTATTGCTGCGTTTGACCAAACGTCGTAACTCGTAATTTATTTTTCCCAGGCGGATTTGGGAAATTTCCGAGCCGCGAGTTTTAGTCGAATGAAGAACTGGATTTGAAAAACTTGTTAACGTCGCTATTTCCTCGTAGTAAAGAAGAAAATTTGTGTGCGTTTACgggtttcttttaaaatgtagttcttatggcagctgtttttttttttccctttctttttttttttttgtcatggcTACTGAAGATtcagggttttgtttttttttttttttaaagtgtgcaCTAGAGAGACGAGTGCAGGGTCTATTTTTGTATGAATATAGTTtagatgttaaatgtttttacgctgcttgtgttttatgtttacaCAACACTCGAAGGCGTATCTGTTCGCAAGTGCCTTTTACTGctgattacacacatacacacacacacacacacacacacacacacacacacaattgcatGTTTCGTTCTCGGTTCTGAAAGTGGAGGATGAACTGCACGTCTTCCTTCCATCTACAGTTGTGTTAAtgctgtgggcggagcttcagtTAATCATGCTCCCTGCtccaccaatcagaattcagcatgTAACTTTACCTGACTGCTATACAATAAATCATCTCATGACTcctgc
>TU460702
tgtttcattttgtgttgCTCTAGTTTTCTTTGTGTCTCTTCTGAACGTTGTTATTATGATAGTAGTCAGTGAGACGTGGTCACTTCTCTCCACCTGATAAAGACTTTATTATTCAGGAACAGAGAAGAGTTTCAGCTTGTCAACCTTTTCCTCTGTTCCACCGAAACGCTGGTCAGAAAAATCAGAAACGTGACTGATGTTTCAGAGGTTTttatatctagaaaaaaaaaaaatacaaaaattgcaGATAATcttgaaaagagagaaaagagagggattcttgttttaattttatcgTTCATCACATCCGAGAAAACGATTAcagactcatcctgtactagtcttctgttcatccaattaaaagctctgtaaaacatggagtttattcatttggaagtgggcggagtttgtgtGGCTTTGCGTCTTAATCCATCAGTCAGGCTCAAACACGTACGGAATAACTCCAAAAGCACGCGGCGTCTCCTCGTCTAGGATATCGTCCTGGTTACAGTGGACAGGCGTGGATGAGAAATCGtccacagctgaaaaaaaagtcTCGTGTTATAAACTCTTGTCCATATTTATCTTGACGGTTAAACTGGTGTGGCGAGTGATGTATCtcgaacgctattggctgttgcgTAAATCAGTCAAGCGAGACGAATCAGAGAGGTGGAGTTACGaggtcatgtgaaaaaaaaaacagttagtaGTGATTACAGGTAGCTAGGGAAAGCTCCGCCCACTGGACCAACCCACTGTGGCGCGGGTTTAAAGGGTAAAGAATATAAAAGTGGACACGAGTGTGTTTTGTTCCCTTTAGGTGTGGAGGggtgacCTCCATAGCGGATCGTCTGAACGTGGACTTCGCCCTGATCCATAAGGAGAGGAAGAAGGCGAACGAAGTGGACCGCATGGTTCTGGTCGGGGATGTCAAAGACAGAGTCGCCATCTTAGTGGACGACATGGCGGACACCTGCGGGACAATCTGCCACGCCGCGGAGAAgttAGTCTCTGCAGGTGCGACTAAAGTCTACGCCATTCTGACACACGGTATCTTCTCTGGACCTGCGATCTCCCGCATAAACAACGCCAACTTCGAGGCGGTGGTCGTGACGAACACTATTCCTCAAGAGGACAAGATCAAACAATGTGACAAGATCCAGGTGATCGACATCTCGATGATTCTGGCTGAAGCGATCAGACGAACCCACAACGGAGAGTCGGTGTCCTACCTGTTCAGCCACGTacctttataacacacacacacactctttacacacacatacactcgtATACACTTCCTTGTCggtatttaaatataaaaacgaATATATTAACCTAAGAAATGATAACTATCTTCATCACGCACTTGGATTGTAAACGTGTCCCTCGTTCCCCGAGTAGACGTCTGGCTTTAATTAAATAGTTTTACGATGTTTTGTACCGACGTGTTTTGATGGTACGTGAACAGAACTCTGGGTTTGCTCCAAAATAACAagcgttattattattattattattattattattattatacatgaCGGAATTTATGTAGCGCTGCCTGAAAACTCTCCCTAACTAGGCAGCGTCATTCTGAACAGAACACGCCCTTTATCGCGACGTTATTTTACAGTGTTGCGTATTCACGCCTAAGCTGGAGTTGAATGTCACTCAACGTCGCTCATTTAACGCTTGTTTCGGAAAGAATATAAATCGGGTGTGAATctgatacagtgtgtgttacgcGTATGTGATCTGTAAATTATCAGTTTATGGATGAACGTTACAGACGTGCAATGCATCATGACATCGTTCAGTTCACTCTCATCGTTTCGTTGCTTCCCAGGCTAACGTAGCTAACGTAGCTatctgattaaaatatattaagattaaaaatctttttcttaCGTCGAAATCTTTAAACACTCCTAAAAGCGCACTCCTTATTCGCAACTGCGTATTTAAGAAGAAATTTATTATCAGTACCACGTCCTGTTTTCCTCTCGAGTTCCAGTTTGAAACTTGAGTAGTAGGCGGAGCCTTAGTGGGCGGAGTTATACCATAAACGAAATTCCAGTATAGACCTAAACTACTGCTGCGTGACATCGGAACtcggaattacgtcatttttCATTTCCGAGCTACAAAGCGAGGGacaaaaacatggacgccttcACGATGCTGACGTATTTAGTTAGCTACAAGCTAGCCAGCTGACTTGTGACGAGTGACGCGTATTGCTGCGTTTGACCAAACGTCGTAACTCGTAATTTATTTTTCCCAGGCGGATTTGGGAAATTTCCGAGCCGCGAGTTTTAGTCGAATGAAGAACTGGATTTGAAAAACTTGTTAACGTCGCTATTTCCTCGTAGTAAAGAAGAAAATTTGTGTGCGTTTACgggtttcttttaaaatgtagttcttatggcagctgtttttttttttccctttctttttttttttttgtcatggcTACTGAAGATtcagggttttgtttttttttttttttaaagtgtgcaCTAGAGAGACGAGTGCAGGGTCTATTTTTGTATGAATATAGTTtagatgttaaatgtttttacgctgcttgtgttttatgtttacaCAACACTCGAAGGCGTATCTGTTCGCAAGTGCCTTTTACTGctgattacacacatacacacacacacacacacacacacacacacacacacaattgcatGTTTCGTTCTCGGTTCTGAAAGTGGAGGATGAACTGCACGTCTTCCTTCCATCTACAGTTGTGTTAAtgctgtgggcggagcttcagtTAATCATGCTCCCTGCtccaccaatcagaattcagcatgTAACTTTACCTGACTGCTATACAATAAATCATCTCATGACTcctgc
>XM_026910409.2
cctctctctctctctctctctctctctctctctctctgttgtttcattttgtgttgCTCTAGTTTTCTTTGTGTCTCTTCTGAACGTTGTTATTATGATAGTAGTCAGTGAGACGTGGTCACTTCTCTCCACCTGATAAAGACTTTATTATTCAGGAACAGAGAAGAGTTTCAGCTTGTCAACCTTTTCCTCTGTTCCACCGAAACGCTGGTCAGAAAAATCAGAAACGTGACTGATGTTTCAGAGGTTTttatatctagaaaaaaaaaaaatacaaaaattgcaGATAATcttgaaaagagagaaaagagagggattcttgttttaattttatcgTTCATCACATCCGAGAAAACGATTAcagactcatcctgtactagtcttctgttcatccaattaaaagctctgtaaaacatggagtttattcatttggaagtgggcggagtttgtgtGGCTTTGCGTCTTAATCCATCAGTCAGGCTCAAACACGTACGGAATAACTCCAAAAGCACGCGGCGTCTCCTCGTCTAGGATATCGTCCTGGTTACAGTGGACAGGCGTGGATGAGAAATCGtccacagctgaaaaaaaagtcTCGTGTTATAAACTCTTGTCCATATTTATCTTGACGGTTAAACTGGTGTGGCGAGTGATGTATCtcgaacgctattggctgttgcgTAAATCAGTCAAGCGAGACGAATCAGAGAGGTGGAGTTACGaggtcatgtgaaaaaaaaaacagttagtaGTGATTACAGGTAGCTAGGGAAAGCTCCGCCCACTGGACCAACCCACTGTGGCGCGGGTTTAAAGGGTAAAGAATATAAAAGTGGACACGAGTGTGTTTTGTTCCCTTTAGGTGTGGAGGGTAAGGGCctgctgtgtgtgcgtgtgtgagtgttcctCTTCGTCACAggtttaaaacaaatcaaaagatATTTTGTTGGCCGTTAGCTAACAGCGTATGGCTTAGAGACGCTGATTTCTGTCTCGTCCCACACACACGCTAAAGATATCTAAACGCTAAATTATCCACTTACACGCACACGCAGGATTCCGTCCACCTGAAGAGTGAATATGACggaaaaaaacatcaagaaTTTCTCGTTTATCTGAAGCGGAAACCTTTTTTAAcctctcctgaccaatcagatgtcAGACGTCAGACTTAACCGCGAATTAGTaaacgatttttttttattatgatcaCATAAtctaaatatttctttatttctcccGGTTCTTTGCTGGAAACCGTACGCAATATCGTTAACATAGACGGAGGAATCTGTCCCATTCCATTCATAGGGGAcggatatttttatttatttattttttttttaaaagagcatTCACATGGGACACTCTTGGAAAATCCCACAATTCCCGTCAGTGAATGGGAAATCCCAAAAACACGAGGAATCACTCCATCACTGCGCCtgttataaaatcatttttcttctAAAATGAGGTCATCATAACACCCTGAAACACAATTAAAGGTTAAGAAGTTAAGGTGAAAATAAGATACAGGTACACGCCACACGCCGACTTGTAAAGGCTCGGTCATATTAAAGCGTCCATCTGCAAGCTCTCCACTCTAACTAGACTAGCACGCTAGTGCACGCTTTAATATAACGCTTAAACAGCGGCTTGAATCCCTTGTTAACCACTCTCACCTAGTGAGTTTGTGCATCCAttctgcagtgtgtttgaggtttatgaaggtgtgtgtagtgtgtgtagtgtgtgtagtgtgcattTTGACATTTCTCTGCATCACTAAAGTCGCTAAAAACGGAATGACCTCAGGCTAATTTTAGCAACAGCGTCAGTTTTCAGGGAACGTGTTTGCCTGAGCGTGGCAGTTTAATAAGCGTGGTGTGAATAAGGGCCAATACGGATACGACAAGACGTGCagtaggaatgtgtgtgtgtgtgcgtgtgtgtgtgcgtgtgtgtgcgtgtgtgtgtgtagggtgacCTCCATAGCGGATCGTCTGAACGTGGACTTCGCCCTGATCCATAAGGAGAGGAAGAAGGCGAACGAAGTGGACCGCATGGTTCTGGTCGGGGATGTCAAAGACAGAGTCGCCATCTTAGTGGACGACATGGCGGACACCTGCGGGACAATCTGCCACGCCGCGGAGAAgttAGTCTCTGCAGGTGCGACTAAAGTCTACGCCATTCTGACACACGGTATCTTCTCTGGACCTGCGATCTCCCGCATAAACAACGCCAACTTCGAGGCGGTGGTCGTGACGAACACTATTCCTCAAGAGGACAAGATCAAACAATGTGACAAGATCCAGGTGATCGACATCTCGATGATTCTGGCTGAAGCGATCAGACGAACCCACAACGGAGAGTCGGTGTCCTACCTGTTCAGCCACGTacctttataacacacacacactcttaacacaaacacacacactctttacacacacacacactctttacacacacatacactcgtATACACTTCCTTGTCggtatttaaatataaaaacgaATATATTAACCTAAGAAATGATAACTATCTTCATCACGCACTTGGATTGTAAACGTGTCCCTCGTTCCCCGAGTAGACGTCTGGCTTTAATTAAATAGTTTTACGATGTTTTGTACCGACGTGTTTTGATGGTACGTGAACAGAACTCTGGGTTTGCTCCAAAATAACAagcgttattattattattattattattattattattatacatgaCGGAATTTATGTAGCGCTGCCTGAAAACTCTCCCTAACTAGGCAGCGTCATTCTGAACAGAACACGCCCTTTATCGCGACGTTATTTTACAGTGTTGCGTATTCACGCCTAAGCTGGAGTTGAATGTCACTCAACGTCGCTCATTTAACGCTTGTTTCGGAAAGAATATAAATCGGGTGTGAATctgatacagtgtgtgttacgcGTATGTGATCTGTAAATTATCAGTTTATGGATGAACGTTACAGACGTGCAATGCATCATGACATCGTTCAGTTCACTCTCATCGTTTCGTTGCTTCCCAGGCTAACGTAGCTAACGTAGCTatctgattaaaatatattaagattaaaaatctttttcttaCGTCGAAATCTTTAAACACTCCTAAAAGCGCACTCCTTATTCGCAACTGCGTATTTAAGAAGAAATTTATTATCAGTACCACGTCCTGTTTTCCTCTCGAGTTCCAGTTTGAAACTTGAGTAGTAGGCGGAGCCTTAGTGGGCGGAGTTATACCATAAACGAAATTCCAGTATAGACCTAAACTACTGCTGCGTGACATCGGAACtcggaattacgtcatttttCATTTCCGAGCTACAAAGCGAGGGacaaaaacatggacgccttcACGATGCTGACGTATTTAGTTAGCTACAAGCTAGCCAGCTGACTTGTGACGAGTGACGCGTATTGCTGCGTTTGACCAAACGTCGTAACTCGTAATTTATTTTTCCCAGGCGGATTTGGGAAATTTCCGAGCCGCGAGTTTTAGTCGAATGAAGAACTGGATTTGAAAAACTTGTTAACGTCGCTATTTCCTCGTAGTAAAGAAGAAAATTTGTGTGCGTTTACgggtttcttttaaaatgtagttcttatggcagctgtttttttttttccctttctttttttttttttgtcatggcTACTGAAGATtcagggttttgtttttttttttttttaaagtgtgcaCTAGAGAGACGAGTGCAGGGTCTATTTTTGTATGAATATAGTTtagatgttaaatgtttttacgctgcttgtgttttatgtttacaCAACACTCGAAGGCGTATCTGTTCGCAAGTGCCTTTTACTGctgattacacacatacacacacacacacacacacacacacacacacacacaattgcatGTTTCGTTCTCGGTTCTGAAAGTGGAGGATGAACTGCACGTCTTCCTTCCATCTACAGTTGTGTTAAtgctgtgggcggagcttcagtTAATCATGCTCCCTGCtccaccaatcagaattcagcatgTAACTTTACCTGACTGCTATACAATAAATCATCTCATGACTcctgcaa

Function

symbol description
prps1a Predicted to enable ATP binding activity and ribose phosphate diphosphokinase activity. Predicted to be involved in 5-phosphoribose 1-diphosphate biosynthetic process and purine nucleotide biosynthetic process. Predicted to act upstream of or within nucleobase-containing small molecule metabolic process and phosphorylation. Predicted to be part of ribose phosphate diphosphokinase complex. Predicted to be active in cytoplasm. Is expressed in several structures, including alar plate midbrain region; immature eye; nervous system; notochord; and yolk syncytial layer. Used to study Charcot-Marie-Tooth disease X-linked recessive 5. Human ortholog(s) of this gene implicated in Arts syndrome; X-linked deafness 1; X-linked recessive disease (multiple); gout; and retinitis pigmentosa. Orthologous to several human genes including PRPS1 (phosphoribosyl pyrophosphate synthetase 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU460701 False 2082 TUCP 0.43 4 17753486 17757363
TU460702 False 2880 TUCP 0.42 5 17751578 17757363
XM_026910409.2 True 4069 mRNA 0.42 3 17751539 17757365

Neighbor

gene id symbol gene type direction distance location
nexmifa LOC108443769 coding upstream 100182 17636716 ~ 17651357 (+)
cnga2b LOC108443773 coding upstream 157178 17586091 ~ 17594361 (+)
chmp1b chmp1b,chm1b,LOC101476317,LOC106603331 coding upstream 169772 17576459 ~ 17581767 (+)
brwd3 brwd3,LOC107672566,LOC107680390 coding upstream 178263 17549593 ~ 17573276 (+)
npas2 LOC108259764,LOC108442046 coding upstream 362113 17349263 ~ 17389426 (+)
tbx5b NA coding downstream 2786 17760151 ~ 17766824 (+)
cfap73 NA coding downstream 14946 17772311 ~ 17777678 (+)
LOC113524247 NA coding downstream 47425 17804790 ~ 17807771 (+)
LOC113524211 NA coding downstream 52281 17809646 ~ 17814029 (+)
LOC113524212 NA coding downstream 57464 17814829 ~ 17817226 (+)
G388656 NA non-coding upstream 98 17751199 ~ 17751441 (+)
G388640 NA non-coding upstream 12858 17687004 ~ 17738681 (+)
G388619 NA non-coding upstream 131522 17574727 ~ 17620017 (+)
LOC117596270 NA non-coding upstream 422305 17327564 ~ 17329234 (+)
G388507 NA non-coding upstream 522295 17210017 ~ 17229244 (+)
G388890 NA non-coding downstream 43469 17800834 ~ 17801123 (+)
G388895 NA non-coding downstream 64351 17821716 ~ 17873548 (+)
G388966 NA non-coding downstream 262442 18019807 ~ 18075992 (+)
G388968 NA non-coding downstream 321565 18078930 ~ 18079378 (+)
G388978 NA non-coding downstream 330026 18087391 ~ 18087749 (+)
LOC117596208 prps1a,LOC107733231,LOC107672505 other upstream 89059 17659696 ~ 17662480 (+)
LOC113524235 atrxl,LOC108443772 other upstream 126205 17596195 ~ 17625334 (+)
LOC117596240 NA other upstream 150029 17601311 ~ 17601510 (+)
hmgn7 hmgn7,LOC108260037,LOC107672554,LOC108442050,LOC107756557,LOC103026953 other upstream 290470 17455494 ~ 17461069 (+)
radx LOC108259901 other upstream 338697 17390866 ~ 17412842 (+)
tpcn1 tpcn1,LOC107733226 other downstream 25560 17782925 ~ 17800017 (+)
gab3 gab3 other downstream 338801 18096166 ~ 18143123 (+)
G389305 NA other downstream 938443 18695808 ~ 18769458 (+)

Expression


Co-expression Network