Gene
RNA
| Item | Value |
|---|---|
| gene id | G388658 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047621.1 |
| NCBI id | CM018567.1 |
| chromosome length | 18889892 |
| location | 17754577 ~ 17754895 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU460703 | True | 274 | lncRNA | 0.51 | 2 | 17754577 | 17754895 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| nexmifa | LOC108443769 | coding | upstream | 103220 | 17636716 ~ 17651357 (+) |
| cnga2b | LOC108443773 | coding | upstream | 160216 | 17586091 ~ 17594361 (+) |
| chmp1b | chmp1b,chm1b,LOC101476317,LOC106603331 | coding | upstream | 172810 | 17576459 ~ 17581767 (+) |
| brwd3 | brwd3,LOC107672566,LOC107680390 | coding | upstream | 181301 | 17549593 ~ 17573276 (+) |
| npas2 | LOC108259764,LOC108442046 | coding | upstream | 365151 | 17349263 ~ 17389426 (+) |
| tbx5b | NA | coding | downstream | 5256 | 17760151 ~ 17766824 (+) |
| cfap73 | NA | coding | downstream | 17416 | 17772311 ~ 17777678 (+) |
| LOC113524247 | NA | coding | downstream | 49895 | 17804790 ~ 17807771 (+) |
| LOC113524211 | NA | coding | downstream | 54751 | 17809646 ~ 17814029 (+) |
| LOC113524212 | NA | coding | downstream | 59934 | 17814829 ~ 17817226 (+) |
| G388656 | NA | non-coding | upstream | 3136 | 17751199 ~ 17751441 (+) |
| G388640 | NA | non-coding | upstream | 15896 | 17687004 ~ 17738681 (+) |
| G388619 | NA | non-coding | upstream | 134560 | 17574727 ~ 17620017 (+) |
| LOC117596270 | NA | non-coding | upstream | 425343 | 17327564 ~ 17329234 (+) |
| G388507 | NA | non-coding | upstream | 525333 | 17210017 ~ 17229244 (+) |
| G388890 | NA | non-coding | downstream | 45939 | 17800834 ~ 17801123 (+) |
| G388895 | NA | non-coding | downstream | 66821 | 17821716 ~ 17873548 (+) |
| G388966 | NA | non-coding | downstream | 264912 | 18019807 ~ 18075992 (+) |
| G388968 | NA | non-coding | downstream | 324035 | 18078930 ~ 18079378 (+) |
| G388978 | NA | non-coding | downstream | 332496 | 18087391 ~ 18087749 (+) |
| LOC117596208 | prps1a,LOC107733231,LOC107672505 | other | upstream | 92097 | 17659696 ~ 17662480 (+) |
| LOC113524235 | atrxl,LOC108443772 | other | upstream | 129243 | 17596195 ~ 17625334 (+) |
| LOC117596240 | NA | other | upstream | 153067 | 17601311 ~ 17601510 (+) |
| hmgn7 | hmgn7,LOC108260037,LOC107672554,LOC108442050,LOC107756557,LOC103026953 | other | upstream | 293508 | 17455494 ~ 17461069 (+) |
| radx | LOC108259901 | other | upstream | 341735 | 17390866 ~ 17412842 (+) |
| tpcn1 | tpcn1,LOC107733226 | other | downstream | 28030 | 17782925 ~ 17800017 (+) |
| gab3 | gab3 | other | downstream | 341271 | 18096166 ~ 18143123 (+) |
| G389305 | NA | other | downstream | 940913 | 18695808 ~ 18769458 (+) |
