G388890


Basic Information

Item Value
gene id G388890
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 17800834 ~ 17801123 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU461014
AGTTTTACTCTGTGAAGCCTGAAAATCGTCTGATGACCTCCAGTATTTTaactctctgttttttttagacCAAGTTTACCACATTTTAAGCACAGATGCGTTCTATATACAAAcatatttgtgaatatttgCTTTACTAGTCGTGCCGTAAGAGTTTCTATTTAATTTGAGCTGTAAATCACGTGCAGTGATGAAGCTGTTAAACTTTCTCCAACACTAAACTTCGATTAAAACGTCAGAGCCGAGGGTTTACACACGACCGCTGTTCATACACCACTTTTCTATTCCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU461014 True 290 lncRNA 0.37 1 17800834 17801123

Neighbor

gene id symbol gene type direction distance location
cfap73 NA coding upstream 23156 17772311 ~ 17777678 (+)
tbx5b NA coding upstream 34010 17760151 ~ 17766824 (+)
nexmifa LOC108443769 coding upstream 149477 17636716 ~ 17651357 (+)
cnga2b LOC108443773 coding upstream 206473 17586091 ~ 17594361 (+)
chmp1b chmp1b,chm1b,LOC101476317,LOC106603331 coding upstream 219067 17576459 ~ 17581767 (+)
LOC113524247 NA coding downstream 3667 17804790 ~ 17807771 (+)
LOC113524211 NA coding downstream 8523 17809646 ~ 17814029 (+)
LOC113524212 NA coding downstream 13706 17814829 ~ 17817226 (+)
agtr2 NA coding downstream 23413 17824536 ~ 17836232 (+)
sh2d1aa NA coding downstream 41115 17842238 ~ 17848965 (+)
G388658 NA non-coding upstream 45939 17754577 ~ 17754895 (+)
G388656 NA non-coding upstream 49393 17751199 ~ 17751441 (+)
G388640 NA non-coding upstream 62153 17687004 ~ 17738681 (+)
G388619 NA non-coding upstream 180817 17574727 ~ 17620017 (+)
LOC117596270 NA non-coding upstream 471600 17327564 ~ 17329234 (+)
G388895 NA non-coding downstream 20593 17821716 ~ 17873548 (+)
G388966 NA non-coding downstream 218684 18019807 ~ 18075992 (+)
G388968 NA non-coding downstream 277807 18078930 ~ 18079378 (+)
G388978 NA non-coding downstream 286268 18087391 ~ 18087749 (+)
G388980 NA non-coding downstream 290760 18091883 ~ 18094814 (+)
tpcn1 tpcn1,LOC107733226 other upstream 817 17782925 ~ 17800017 (+)
LOC113524245 prps1a,LOC107733231,LOC103031347,LOC107672505,LOC107597240,LOC108443767 other upstream 43469 17751539 ~ 17757365 (+)
LOC117596208 prps1a,LOC107733231,LOC107672505 other upstream 138354 17659696 ~ 17662480 (+)
LOC113524235 atrxl,LOC108443772 other upstream 175500 17596195 ~ 17625334 (+)
LOC117596240 NA other upstream 199324 17601311 ~ 17601510 (+)
gab3 gab3 other downstream 295043 18096166 ~ 18143123 (+)
G389305 NA other downstream 894685 18695808 ~ 18769458 (+)

Expression


Co-expression Network