tbx5b


Basic Information

Item Value
gene id tbx5b
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 17760151 ~ 17766824 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910358.2
TATAAAAAGGAGAGCAGaaaggacagagaggagagagagagaagtaaacAGCACGTATTCAGTGCACGAGGAGCAGAGAAGAAACTCGTCATGCCATGGAGAGAGAAAAGGGCATGGAGGGCATCAGAGTTCACCTGCACGAGCGCGAGCTGTGGAGGAAGTTTCATGACGTCACCACAGAAATGATCATCACCAAAGCGGGCCGACGAATGTTCCCGAGTTACAAAGTGAAGGTAACGGGTCTGAACCCCAGAGCTAAATACATCCTGCTGATGGACATCGTGTCTACTGATGAGCACCGCTACAAATACGCAGATAACAAATGgtcagTGAGTGGGAAAGCAGATCCCGCTATTCCGGGTCGACTGTACGTTCATCCCGACTCTCCTGCACCTGGAGCTCACTGGACCAAACAACTCGTCTCCTTCCAGAAACTCAAACTGACCAACAACCATCTCGACACCTTCGGCCATatcaTATTAAACTCCATGCATAAATACCAGCCCCGGCTGCACATAGTGAAGGCTGATGAGAAAAACGGTTTTGGCTCCAGCAGCACGACGTTCTGCACACACTCGTTCCCCGAGACCACCTTCATCGCCGTCACGTCCTACCAGAACCACacaATCACTCAGTTGAAGATCGAGAACAATCCATTTGCTAAGGGTTTCCGTGGTAACGACGACATCGATATGCACCGAATATCTTGTGCACAGAGTAGTAAAGAATTCCCGCTGGTACCAAGAACGACAGTTCGCCCGAGAAATGTCGATTCAGCCACGCCCTACGCACTTAACCCTGCCCTCATGTCTGACTACACCTGCTCAGAGCCTccagGAAAACGCACTCCTGCATCAGAAGACAACTGTTTCGCTAAAACTGTCGCTTCGTGTCACCTCCTGACCTATCAGATGGAGTTCGGGTCGAGTAACGGAGCCCACTACAGCGCGGATCCGGTGCAGCGTCAGCCCTGTATGTACACCAATGTACAGTGGGAATCTTACACCGAGTGCCCACCGTATTCAACGTTTACTTCCTCTcgggaagtgggcggggcttcgtACTCCACCCCTGAACTTTCCCAGGACATCTACCCACAATACACCTGTGAAGTGGGCGCGCAGGCGCATTGCCCGATGGCTGATTACGCTCTGTACACGGAGCAGGAGCAGAGTCACAGTGTGAGTAGCGTAGTGGGGTACCCACTTCACTGAGACTAGGCCACGCCTACTTAATTAAGACTGAcagctacagaggccacgcctacttaATTAAGACTGAcagctacagaggccacgcctacttcagcAAGGATGTCGGACACAAAGgcctaataattaataatattacgCTAGTAAAATGAGCTCTTTGTCATATTAGACTTTACTGATACTCACTTTTAAATGCGTAAATATTAAGATATTTTCTCCTGTTCAACGTTACACCCGTAAATTTCAGATttagaaatgaaaaagcaaTTTTATGAGTCCAATAATTTATTCACGAATCTAAATAACCAGGTTTAATGCGATGGAACGACTAGACAATGTAAAGCTCATACTTCTAAAGTTCTTGTTTCCAAACAAAACTAGCAAGGGGTTAGCAAGGGGAATTCTGGGTAATACACACATCAGTGCCTgatagggagagagacagagaaagacagacagttatttggggacaaaaactaaaaaaagttatttggggacaaaaaaaaaataaagcaagctTGTGAATCACAGAAAAATGATTCAGCACTGAACTAACTGATTCAGCAATTAATTACTGAATCACTTCTAAATGAATCTTTGAATCAGAGAAATGATTCCAGCAATGAATCTCTGAATCATAGATGAGTGTAACAGCAATCAATCGCTGAATCACATCTAAATGATTCCACATTCTGAAATGAATCTATGACTCACAGATAAATGAACCAGCAATAAATCACTGAATCATAGAcaaatgattcagaaatatGATTCAACCCCATAATTACTGATAACAAGCTCAGCTATTAATTACTGAATCACTGGTAAATGGATCTTTAATGAATCTTTAAAtaacagagaaataaataataaataataataaataaatctctcaaTGACAGATTGAAtcaaagggtgtgtgtgtgtgtgtgtgtgtgtgtgaaatatctcAGACAAGTAGATAAACAAGATGATTCTGAATCACTCAGTCTGTTTATGTTGTAGTTTTGATTTGAACTATTTACGGTCAAATTTTATTCACCAACAATCATACActcttttaaactgttttattttgtacatatttcttTCCCCATGAACTGTTTTAATTGAATTTGTATACAGTAGACGTGTCTTGAGGTGCTTGTGTGGCTAAATAAAGACGAGAAATTACATTTGA
>XM_026910359.2
AGaaaggacagagaggagagagagagaagtaaacAGCACGTATTCAGTGTACGGGCGAGCGATAGTTTATAATAATCTGactttttctgtagcatttctAATCATACAgggaattaaatatttttattattatctattgtGGAATTTTATCAGGCACGAGGAGCAGAGAAGAAACTCGTCATGCCATGGAGAGAGAAAAGGGCATGGAGGGCATCAGAGTTCACCTGCACGAGCGCGAGCTGTGGAGGAAGTTTCATGACGTCACCACAGAAATGATCATCACCAAAGCGGGCCGACGAATGTTCCCGAGTTACAAAGTGAAGGTAACGGGTCTGAACCCCAGAGCTAAATACATCCTGCTGATGGACATCGTGTCTACTGATGAGCACCGCTACAAATACGCAGATAACAAATGgtcagTGAGTGGGAAAGCAGATCCCGCTATTCCGGGTCGACTGTACGTTCATCCCGACTCTCCTGCACCTGGAGCTCACTGGACCAAACAACTCGTCTCCTTCCAGAAACTCAAACTGACCAACAACCATCTCGACACCTTCGGCCATatcaTATTAAACTCCATGCATAAATACCAGCCCCGGCTGCACATAGTGAAGGCTGATGAGAAAAACGGTTTTGGCTCCAGCAGCACGACGTTCTGCACACACTCGTTCCCCGAGACCACCTTCATCGCCGTCACGTCCTACCAGAACCACacaATCACTCAGTTGAAGATCGAGAACAATCCATTTGCTAAGGGTTTCCGTGGTAACGACGACATCGATATGCACCGAATATCTTGTGCACAGAGTAAAGAATTCCCGCTGGTACCAAGAACGACAGTTCGCCCGAGAAATGTCGATTCAGCCACGCCCTACGCACTTAACCCTGCCCTCATGTCTGACTACACCTGCTCAGAGCCTccagGAAAACGCACTCCTGCATCAGAAGACAACTGTTTCGCTAAAACTGTCGCTTCGTGTCACCTCCTGACCTATCAGATGGAGTTCGGGTCGAGTAACGGAGCCCACTACAGCGCGGATCCGGTGCAGCGTCAGCCCTGTATGTACACCAATGTACAGTGGGAATCTTACACCGAGTGCCCACCGTATTCAACGTTTACTTCCTCTcgggaagtgggcggggcttcgtACTCCACCCCTGAACTTTCCCAGGACATCTACCCACAATACACCTGTGAAGTGGGCGCGCAGGCGCATTGCCCGATGGCTGATTACGCTCTGTACACGGAGCAGGAGCAGAGTCACAGTGTGAGTAGCGTAGTGGGGTACCCACTTCACTGAGACTAGGCCACGCCTACTTAATTAAGACTGAcagctacagaggccacgcctacttaATTAAGACTGAcagctacagaggccacgcctacttcagcAAGGATGTCGGACACAAAGgcctaataattaataatattacgCTAGTAAAATGAGCTCTTTGTCATATTAGACTTTACTGATACTCACTTTTAAATGCGTAAATATTAAGATATTTTCTCCTGTTCAACGTTACACCCGTAAATTTCAGATttagaaatgaaaaagcaaTTTTATGAGTCCAATAATTTATTCACGAATCTAAATAACCAGGTTTAATGCGATGGAACGACTAGACAATGTAAAGCTCATACTTCTAAAGTTCTTGTTTCCAAACAAAACTAGCAAGGGGTTAGCAAGGGGAATTCTGGGTAATACACACATCAGTGCCTgatagggagagagacagagaaagacagacagttatttggggacaaaaactaaaaaaagttatttggggacaaaaaaaaaataaagcaagctTGTGAATCACAGAAAAATGATTCAGCACTGAACTAACTGATTCAGCAATTAATTACTGAATCACTTCTAAATGAATCTTTGAATCAGAGAAATGATTCCAGCAATGAATCTCTGAATCATAGATGAGTGTAACAGCAATCAATCGCTGAATCACATCTAAATGATTCCACATTCTGAAATGAATCTATGACTCACAGATAAATGAACCAGCAATAAATCACTGAATCATAGAcaaatgattcagaaatatGATTCAACCCCATAATTACTGATAACAAGCTCAGCTATTAATTACTGAATCACTGGTAAATGGATCTTTAATGAATCTTTAAAtaacagagaaataaataataaataataataaataaatctctcaaTGACAGATTGAAtcaaagggtgtgtgtgtgtgtgtgtgtgtgtgtgaaatatctcAGACAAGTAGATAAACAAGATGATTCTGAATCACTCAGTCTGTTTATGTTGTAGTTTTGATTTGAACTATTTACGGTCAAATTTTATTCACCAACAATCATACActcttttaaactgttttattttgtacatatttcttTCCCCATGAACTGTTTTAATTGAATTTGTATACAGTAGACGTGTCTTGAGGTGCTTGTGTGGCTAAATAAAGACGAGAAATTACATTTGA
>XM_034300490.1
GCAGaaaggacagagaggagagagagagaagtaaacAGCACGTATTCAGTGTACGGGCGAGCGATAGTTTATAATAATCTGactttttctgtagcatttctAATCATACAgggaattaaatatttttattattatctattgtGGAATTTTATCAGGCACGAGGAGCAGAGAAGAAACTCGTCATGCCATGGAGAGAGAAAAGGGCATGGAGGGCATCAGAGTTCACCTGCACGAGCGCGAGCTGTGGAGGAAGTTTCATGACGTCACCACAGAAATGATCATCACCAAAGCGGGCCGACGAATGTTCCCGAGTTACAAAGTGAAGGTAACGGGTCTGAACCCCAGAGCTAAATACATCCTGCTGATGGACATCGTGTCTACTGATGAGCACCGCTACAAATACGCAGATAACAAATGgtcagTGAGTGGGAAAGCAGATCCCGCTATTCCGGGTCGACTGTACGTTCATCCCGACTCTCCTGCACCTGGAGCTCACTGGACCAAACAACTCGTCTCCTTCCAGAAACTCAAACTGACCAACAACCATCTCGACACCTTCGGCCATatcaTATTAAACTCCATGCATAAATACCAGCCCCGGCTGCACATAGTGAAGGCTGATGAGAAAAACGGTTTTGGCTCCAGCAGCACGACGTTCTGCACACACTCGTTCCCCGAGACCACCTTCATCGCCGTCACGTCCTACCAGAACCACacaATCACTCAGTTGAAGATCGAGAACAATCCATTTGCTAAGGGTTTCCGTGGTAACGACGACATCGATATGCACCGAATATCTTGTGCACAGAGTAGTAAAGAATTCCCGCTGGTACCAAGAACGACAGTTCGCCCGAGAAATGTCGATTCAGCCACGCCCTACGCACTTAACCCTGCCCTCATGTCTGACTACACCTGCTCAGAGCCTccagGAAAACGCACTCCTGCATCAGAAGACAACTGTTTCGCTAAAACTGTCGCTTCGTGTCACCTCCTGACCTATCAGATGGAGTTCGGGTCGAGTAACGGAGCCCACTACAGCGCGGATCCGGTGCAGCGTCAGCCCTGTATGTACACCAATGTACAGTGGGAATCTTACACCGAGTGCCCACCGTATTCAACGTTTACTTCCTCTcgggaagtgggcggggcttcgtACTCCACCCCTGAACTTTCCCAGGACATCTACCCACAATACACCTGTGAAGTGGGCGCGCAGGCGCATTGCCCGATGGCTGATTACGCTCTGTACACGGAGCAGGAGCAGAGTCACAGTGTGAGTAGCGTAGTGGGGTACCCACTTCACTGAGACTAGGCCACGCCTACTTAATTAAGACTGAcagctacagaggccacgcctacttaATTAAGACTGAcagctacagaggccacgcctacttcagcAAGGATGTCGGACACAAAGgcctaataattaataatattacgCTAGTAAAATGAGCTCTTTGTCATATTAGACTTTACTGATACTCACTTTTAAATGCGTAAATATTAAGATATTTTCTCCTGTTCAACGTTACACCCGTAAATTTCAGATttagaaatgaaaaagcaaTTTTATGAGTCCAATAATTTATTCACGAATCTAAATAACCAGGTTTAATGCGATGGAACGACTAGACAATGTAAAGCTCATACTTCTAAAGTTCTTGTTTCCAAACAAAACTAGCAAGGGGTTAGCAAGGGGAATTCTGGGTAATACACACATCAGTGCCTgatagggagagagacagagaaagacagacagttatttggggacaaaaactaaaaaaagttatttggggacaaaaaaaaaataaagcaagctTGTGAATCACAGAAAAATGATTCAGCACTGAACTAACTGATTCAGCAATTAATTACTGAATCACTTCTAAATGAATCTTTGAATCAGAGAAATGATTCCAGCAATGAATCTCTGAATCATAGATGAGTGTAACAGCAATCAATCGCTGAATCACATCTAAATGATTCCACATTCTGAAATGAATCTATGACTCACAGATAAATGAACCAGCAATAAATCACTGAATCATAGAcaaatgattcagaaatatGATTCAACCCCATAATTACTGATAACAAGCTCAGCTATTAATTACTGAATCACTGGTAAATGGATCTTTAATGAATCTTTAAAtaacagagaaataaataataaataataataaataaatctctcaaTGACAGATTGAAtcaaagggtgtgtgtgtgtgtgtgtgtgtgtgtgaaatatctcAGACAAGTAGATAAACAAGATGATTCTGAATCACTCAGTCTGTTTATGTTGTAGTTTTGATTTGAACTATTTACGGTCAAATTTTATTCACCAACAATCATACActcttttaaactgttttattttgtacatatttcttTCCCCATGAACTGTTTTAATTGAATTTGTATACAGTAGACGTGTCTTGAGGTGCTTGTGTGGCTAAATAAAGACGAGAAATTACATTTGA

Function

NR:

description
PREDICTED: T-box transcription factor TBX5

GO:

id name namespace
GO:0003342 proepicardium development biological_process
GO:0003344 pericardium morphogenesis biological_process
GO:0055007 cardiac muscle cell differentiation biological_process
GO:0060174 limb bud formation biological_process
GO:0003190 atrioventricular valve formation biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0003294 atrial ventricular junction remodeling biological_process
GO:0001947 heart looping biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910358.2 False 2391 mRNA 0.43 9 17760151 17766824
XM_026910359.2 False 2478 mRNA 0.42 8 17760166 17766824
XM_034300490.1 True 2483 mRNA 0.42 8 17760164 17766824

Neighbor

gene id symbol gene type direction distance location
nexmifa LOC108443769 coding upstream 108794 17636716 ~ 17651357 (+)
cnga2b LOC108443773 coding upstream 165790 17586091 ~ 17594361 (+)
chmp1b chmp1b,chm1b,LOC101476317,LOC106603331 coding upstream 178384 17576459 ~ 17581767 (+)
brwd3 brwd3,LOC107672566,LOC107680390 coding upstream 186875 17549593 ~ 17573276 (+)
npas2 LOC108259764,LOC108442046 coding upstream 370725 17349263 ~ 17389426 (+)
cfap73 NA coding downstream 5487 17772311 ~ 17777678 (+)
LOC113524247 NA coding downstream 37966 17804790 ~ 17807771 (+)
LOC113524211 NA coding downstream 42822 17809646 ~ 17814029 (+)
LOC113524212 NA coding downstream 48005 17814829 ~ 17817226 (+)
agtr2 NA coding downstream 57712 17824536 ~ 17836232 (+)
G388658 NA non-coding upstream 5256 17754577 ~ 17754895 (+)
G388656 NA non-coding upstream 8710 17751199 ~ 17751441 (+)
G388640 NA non-coding upstream 21470 17687004 ~ 17738681 (+)
G388619 NA non-coding upstream 140134 17574727 ~ 17620017 (+)
LOC117596270 NA non-coding upstream 430917 17327564 ~ 17329234 (+)
G388890 NA non-coding downstream 34010 17800834 ~ 17801123 (+)
G388895 NA non-coding downstream 54892 17821716 ~ 17873548 (+)
G388966 NA non-coding downstream 252983 18019807 ~ 18075992 (+)
G388968 NA non-coding downstream 312106 18078930 ~ 18079378 (+)
G388978 NA non-coding downstream 320567 18087391 ~ 18087749 (+)
LOC113524245 prps1a,LOC107733231,LOC103031347,LOC107672505,LOC107597240,LOC108443767 other upstream 2786 17751539 ~ 17757365 (+)
LOC117596208 prps1a,LOC107733231,LOC107672505 other upstream 97671 17659696 ~ 17662480 (+)
LOC113524235 atrxl,LOC108443772 other upstream 134817 17596195 ~ 17625334 (+)
LOC117596240 NA other upstream 158641 17601311 ~ 17601510 (+)
hmgn7 hmgn7,LOC108260037,LOC107672554,LOC108442050,LOC107756557,LOC103026953 other upstream 299082 17455494 ~ 17461069 (+)
tpcn1 tpcn1,LOC107733226 other downstream 16101 17782925 ~ 17800017 (+)
gab3 gab3 other downstream 329342 18096166 ~ 18143123 (+)
G389305 NA other downstream 928984 18695808 ~ 18769458 (+)

Expression


Co-expression Network