cnga2b (LOC108443773)


Basic Information

Item Value
gene id cnga2b
gene name LOC108443773
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 17586091 ~ 17594361 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910377.2
TAACACACAGTGTGGATGTTTTCTGGCGGTTGGAATGGAAGTGTGTATCGTAGTGAAGTGTAAAGTTGGTTTGTCTTCTTTAACATCactgtgtttcctgttttcctgaagaacacacacaggcacacacacctgcactggCACCAGgatgaCAGGTCAGGCTGCAGTAGAGCGCTCTGTGTCCTCTCACCGTCTCTCTGTGAGGAGCAAACTGGAGGATGAACCTGAACGAGCTGAAAGTGCCATCAGCAGgactGATGGAGATGATGACACATGTTCAGAGCTGCAGCGTGTCGCTGCTCTCGATCTCCCAAGTGCAGAAATGCTCGAGGCCTTCAGACGGAGGAGACCGCTGTCCAGgttggtGAATCTGGTGGTGTCTCTGAGAGAATGGGCTCATAAGAGTCTGGTCGAGGAGGAACAGCGGCCTGACTCTTTTCTTGAGCGATTCCGTGGGCCCCAGGCTGCAAACGACCAATCGGCTGCCCCCGCAGAAGCCCCCAAGAAAACCttcaaggagagGTGGGAGGGCTTCGTCGTGTCCCAGTCTgatgatgtttattattattggctGTTCTTCATCGCCTTGGCTTCACTCTATAATTGGATCATGCTGGTTGCCAGAGCATGTTTTGATGAACTACAAATTGAGAACTTCTTCCTGTGGGTGGGGCTTGATTACGTCTGCGACTTCATTTACATACTGGACACCTGCATGCGATTGAGGACAGgatACCTTGAGCAAGGTCTGCTGGTGAAAGACTTGGCCAAGTTGAGAGACAGCTACATTCACACTCTGCAGTTTAAACTGGACATTCTGTCCATCCTGCCCACAGAGCTGCTCTTCTTCATCACAGGGTACATACCCCAACTTCGCTTCAACCGCCTGCTCCGCTTCTCGCGCATGTTTGAGTTCTTCGACCGCACCGAGACGCGCACCAACTACCCCAACGCCTTCCGCATTTGCAACCTCGTCCTCTACATCCTGGTCATCATCCACTGGAACGCGTGCATCTATTACGCCATTTCCAAGGCCCTGGGGCTCAGCTCGGATACGTGGGTGTATTCCGGCGTGAACAAAACACTAGCATTCTGCTATGTGTACTGCTTCTACTGGTCCACGCTAACACTAACCACCATTGGCGAAATGCCCCCTCCAGTGAAGGATGAGGAGTATGTCTTTGTAGTTTTTGACTTCCTGGTAGGCGTGCTGATCTTCGCCACCATTGTCGGTAACGTGGGTTCCATGATCGCCAACATGAATGCTACGAGGGCTGAGTTCCAGGCACGCATCGATGCCATCAAGCACTACATGCACTTCCGCAAGGTCAACCGCACCCTCGAGACGCGCGTCATCAAGTGGTTCGACTACCTCTGGACCAACAAGAAAGCCGTGGACGAACAGGAGGTGCTGAAGAACCTTCCGGATAAGCTGAGGGCCGAAATCGCTATCAATGTCCACCTGGACACACTGAAGAAAGTCCGTCTTTTTCAGGACTGTGAAGCTGGACTACTGGTGGAGCTGGTTCTGAAACTGCGTCCTCAAGTGTACAGTCCTGGGGACTACATCTGCAGGAAGGGTGATATTGGGAAGGAGATGTACATCATCAAGGAGGGGCAGCTAGCTGTGGTGGCAGATGATGGTGTCACACAATTTGCCTTGCTAACCGCCGGCGGTTGTTTTGGCGAAATTAGCATCCTAAACATTCAAGGTAGCAAGATGGGCAACCGGCGCACGGCTAACATACGTAGCATCGGCTACTCTGACCTCTTCTGCCTCTCAAAGGACGACCTAATGGAGGCTGTGACAGAATATCCAGACGCTCAGAAGGTTCTGGAAGAGCGTGGAAGGGAAATCCTTAGAAAGCAGGGCCTCCTGGATGAGAGCGTAGCAGCTGGAGGGCTAGGCGTCATAGACACAGAGGAGAGAGTGGAGCGCTTGGATGCATCTCTGGATATCCTGCAGACACGCTTCGCTCGCTTATTAGGAGAATTCACGAGCACGCAGCGTCGTCTCAAACAACGCATCACAGCGCTCGAGAGGCAGCTGTGTCACACTGGACTCGGGCTGCTCTCGGACAATGAAGCGGAAGGAGAACACGTCGGTGTTCctccacatacacatacacaggcagacatacacacacaacctgaaacacacacacagacttcagCTGAACCGAACTCTGAAGAGGAAAAGTAAATCAGATGTAAAACTGCTTCGATACATATTAGCtcaatattttactttttaccctttgtatgtactgtatgtttgtatatatgtgtgtctgactaagaaattaatttttttaaatcaaatgtgTGTAG

Function

NR:

description
cyclic nucleotide-gated olfactory channel

GO:

id name namespace
GO:0050896 response to stimulus biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0007608 sensory perception of smell biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005216 ion channel activity molecular_function
GO:0030552 cAMP binding molecular_function
GO:0030553 cGMP binding molecular_function

KEGG:

id description
K04950 CNGA3; cyclic nucleotide gated channel alpha 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910377.2 True 2331 mRNA 0.51 7 17586091 17594361

Neighbor

gene id symbol gene type direction distance location
chmp1b chmp1b,chm1b,LOC101476317,LOC106603331 coding upstream 4324 17576459 ~ 17581767 (+)
brwd3 brwd3,LOC107672566,LOC107680390 coding upstream 12815 17549593 ~ 17573276 (+)
npas2 LOC108259764,LOC108442046 coding upstream 196665 17349263 ~ 17389426 (+)
mtnr1c gpr50 coding upstream 247680 17330096 ~ 17338411 (+)
tnfsf10l4 LOC108259907 coding upstream 263840 17317866 ~ 17322251 (+)
nexmifa LOC108443769 coding downstream 42355 17636716 ~ 17651357 (+)
tbx5b NA coding downstream 165790 17760151 ~ 17766824 (+)
cfap73 NA coding downstream 177950 17772311 ~ 17777678 (+)
LOC113524247 NA coding downstream 210429 17804790 ~ 17807771 (+)
LOC113524211 NA coding downstream 215285 17809646 ~ 17814029 (+)
LOC117596270 NA non-coding upstream 256857 17327564 ~ 17329234 (+)
G388507 NA non-coding upstream 356847 17210017 ~ 17229244 (+)
G388508 LOC108260001,LOC103044679,LOC106528523,LOC108251252,LOC108243110,LOC107386326,LOC101165333 non-coding upstream 383474 17194324 ~ 17202617 (+)
G388514 NA non-coding upstream 415412 17170453 ~ 17170679 (+)
G388468 NA non-coding upstream 528600 17047403 ~ 17057491 (+)
G388640 NA non-coding downstream 92643 17687004 ~ 17738681 (+)
G388656 NA non-coding downstream 156838 17751199 ~ 17751441 (+)
G388658 NA non-coding downstream 160216 17754577 ~ 17754895 (+)
G388890 NA non-coding downstream 206473 17800834 ~ 17801123 (+)
G388895 NA non-coding downstream 227355 17821716 ~ 17873548 (+)
hmgn7 hmgn7,LOC108260037,LOC107672554,LOC108442050,LOC107756557,LOC103026953 other upstream 125022 17455494 ~ 17461069 (+)
radx LOC108259901 other upstream 173249 17390866 ~ 17412842 (+)
vma21 vma21,LOC108442053 other upstream 241236 17341418 ~ 17344855 (+)
rpl36a LOC100304549,LOC100219516,LOC106514001,LOC103353280,LOC100690460 other upstream 296610 17281989 ~ 17289481 (+)
LOC113531069 LOC108259908,LOC108260251 other upstream 305514 17277853 ~ 17280577 (+)
LOC113524235 atrxl,LOC108443772 other downstream 1834 17596195 ~ 17625334 (+)
LOC117596240 NA other downstream 6950 17601311 ~ 17601510 (+)
LOC117596208 prps1a,LOC107733231,LOC107672505 other downstream 65335 17659696 ~ 17662480 (+)
LOC113524245 prps1a,LOC107733231,LOC103031347,LOC107672505,LOC107597240,LOC108443767 other downstream 157178 17751539 ~ 17757365 (+)
tpcn1 tpcn1,LOC107733226 other downstream 188564 17782925 ~ 17800017 (+)

Expression


Co-expression Network