chmp1b (chmp1b,chm1b,LOC101476317,LOC106603331)


Basic Information

Item Value
gene id chmp1b
gene name chmp1b,chm1b,LOC101476317,LOC106603331
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 17576459 ~ 17581767 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910413.2
GTGTCGTCATCCCAGTTGTTTTTATCGCGGACGCGGAAGTCGGCGTGAGTGGTGCTTTCTGAGGAAGCCGAGACgaaaagcaggaaaaatcaaGCGTCTGAAAAAAAGTTCACCTCTTCGTGGGATCCTCTAGAACCAGAGAGCCATCATGCCGAACATGGAACAGCATTTGTTTAACCTGAAGTTTGCAGCCAAAGAGTTGCAGCGAAGCTCAAAAAAATGCGACAAGGAAGAGAAAGCGGAGAAGGCCAAAGTGAAGAAGGCGATTCAGAAAGGTAACATGGACGTGGCACGGATCCACGCTGAGAACGCCATCAGACAGAAGAACCAATCTGTGAACTTCCTGAGAATGAGCGCCAGGGTGGATGCTGTGGCGGCGAGAGTGCAGACCGCCGTCACCATGAACAAGGTCACTAAATCCATGGCAGGAGTGGTGAAGGGGATGGACGCGACCCTGAAGAGCATGAACCTGGAGAAGATTTCAGCTCTGATGGACAAATTTGAGCACCAGTTTGAAACCCTGGATGTTCAGACACAACAGATGGAGGACACCATGAGCAGCACAACAACACTTACAACTCcacagAACCAGGTGGACAGTCTGATGCAGGAGATGGCAGATGAAGCTGGgttggATCTCAACATGGAGCTTCCACAGGGACAGACAGGAACATTGGCCAGCAGCGTGGCATCTACAGAACAGgatGAACTCTCTCAGAGGCTGGCTAAACTCAGAGATCAGGTCTGAGTGGATtgacacaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgctacatgTGTATAAGGATGGGCAAagacagagaagtgtgtgtgtgtgtgtgtgtgtgtgtcagtcatcatcatcatcatcatgctcCATGTTTGTGGCTCTCTGATGTCCGGAGGATCTGCTGTTCGGAACGCGTCCTGTACGGATTTCCACGCTCCCTCGTCCGCTCTCCCCGGCTGCAGGTCACTTGCGGCTCCAGGTGGAGGagtgtgtaatgttgtgtagtttagtgttgtgtagtgtagcgTGTCTAATACAGAGCTTCATTATGCAGATTACAGCATCCCTTTCAGCTTCAGCGTACTCTGCGTACTCTGAGCTCTCGCCACAAACTTGAAGGATCCTGGATGCTAACTCATTAATAGGCATGTtagcattgcttttttttttttttttgggactgCTCGGAGATCTTAGCGCTAATTTGTTCGATCCTGCTTCTGACAGCTCGCTCTTTCTTTCTGGACACAGAGGCCACCAATAAACCACCTAATCCAAACACTATGatgaaaaaatgtgtatatatttactcTCCTCTAGTATTGCTCTGTGTGTAAATTCAGGAACACTTTAACCGTCTTGATttataacactgtaataaatgCTAACAGTGACACTGCGCTTGTAGTTACTAATTAACTTGATTTCAATTCATAGAGGTTAATTTCACTCTAAAAAAAACTCTatctaaattcatttaaaacataattCAGAGAGACGAGCGTTTGTTTTTAAGTAATGATCCCATCAAGCGACGTTCGATTTGTCTGTTTCCTTTTAAGGAAATTCCTCAGAGGGGTGTGGCCTGAAATGTAGAAACTAGCAGCCAGGATGTTTGATAACGTTGTgaacaatatgaaaatatcacGATATAATTCTGGGTGGTGAAAGTTTATTTCAGTGTTATGATGAAATTAAACGCTGTTAAGCAGAGATCGTAAACAGAAATGTATAATCAGAACGTAATTTAAATTACAGAACATTGTAACTTTAGCGTAAGTGagttataaacatataaagttttttatatatatacagtgttataACTCAAGACCATTGCTAAAGTTATgctgattaaattttttaaatttatgctGACCTAAATCAACACATAAAATGTTCATCACTAGCCTTGTGGTTGTGCTGGGAAATAATCAGGATTTCCTGCACAGGTAAAGTTAAAGAAGATAAAGAAGCTTTAATGCGTCTATTTATGTTCATTTCTTCATTCGTTTGTTAGCCACATGAAAcatgtctgggttttttttttggggtttatTGGGTAAAAGCTGTCTACAGATTAAGAAccgaaataaatattttataacagttA

Function

symbol description
chmp1b Predicted to be involved in endosome transport via multivesicular body sorting pathway; late endosome to vacuole transport; and protein transport. Predicted to act upstream of or within vacuolar transport. Predicted to be located in cytosol and late endosome membrane. Predicted to be part of ESCRT III complex. Predicted to be active in multivesicular body. Orthologous to human CHMP1B (charged multivesicular body protein 1B).

NR:

description
PREDICTED: charged multivesicular body protein 1b

GO:

id name namespace
GO:0015031 protein transport biological_process

KEGG:

id description
K12197 CHMP1, VPS46, DID2; charged multivesicular body protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910413.2 True 2123 mRNA 0.42 8 17576459 17581767

Neighbor

gene id symbol gene type direction distance location
brwd3 brwd3,LOC107672566,LOC107680390 coding upstream 3183 17549593 ~ 17573276 (+)
npas2 LOC108259764,LOC108442046 coding upstream 187033 17349263 ~ 17389426 (+)
mtnr1c gpr50 coding upstream 238048 17330096 ~ 17338411 (+)
tnfsf10l4 LOC108259907 coding upstream 254208 17317866 ~ 17322251 (+)
LOC117596262 LOC108259908 coding upstream 299491 17275499 ~ 17276968 (+)
cnga2b LOC108443773 coding downstream 4324 17586091 ~ 17594361 (+)
nexmifa LOC108443769 coding downstream 54949 17636716 ~ 17651357 (+)
tbx5b NA coding downstream 178384 17760151 ~ 17766824 (+)
cfap73 NA coding downstream 190544 17772311 ~ 17777678 (+)
LOC113524247 NA coding downstream 223023 17804790 ~ 17807771 (+)
LOC117596270 NA non-coding upstream 247225 17327564 ~ 17329234 (+)
G388507 NA non-coding upstream 347215 17210017 ~ 17229244 (+)
G388508 LOC108260001,LOC103044679,LOC106528523,LOC108251252,LOC108243110,LOC107386326,LOC101165333 non-coding upstream 373842 17194324 ~ 17202617 (+)
G388514 NA non-coding upstream 405780 17170453 ~ 17170679 (+)
G388468 NA non-coding upstream 518968 17047403 ~ 17057491 (+)
G388640 NA non-coding downstream 105237 17687004 ~ 17738681 (+)
G388656 NA non-coding downstream 169432 17751199 ~ 17751441 (+)
G388658 NA non-coding downstream 172810 17754577 ~ 17754895 (+)
G388890 NA non-coding downstream 219067 17800834 ~ 17801123 (+)
G388895 NA non-coding downstream 239949 17821716 ~ 17873548 (+)
hmgn7 hmgn7,LOC108260037,LOC107672554,LOC108442050,LOC107756557,LOC103026953 other upstream 115390 17455494 ~ 17461069 (+)
radx LOC108259901 other upstream 163617 17390866 ~ 17412842 (+)
vma21 vma21,LOC108442053 other upstream 231604 17341418 ~ 17344855 (+)
rpl36a LOC100304549,LOC100219516,LOC106514001,LOC103353280,LOC100690460 other upstream 286978 17281989 ~ 17289481 (+)
LOC113531069 LOC108259908,LOC108260251 other upstream 295882 17277853 ~ 17280577 (+)
LOC113524235 atrxl,LOC108443772 other downstream 14428 17596195 ~ 17625334 (+)
LOC117596240 NA other downstream 19544 17601311 ~ 17601510 (+)
LOC117596208 prps1a,LOC107733231,LOC107672505 other downstream 77929 17659696 ~ 17662480 (+)
LOC113524245 prps1a,LOC107733231,LOC103031347,LOC107672505,LOC107597240,LOC108443767 other downstream 169772 17751539 ~ 17757365 (+)
tpcn1 tpcn1,LOC107733226 other downstream 201158 17782925 ~ 17800017 (+)

Expression


Co-expression Network