Gene
RNA
| Item | Value |
|---|---|
| gene id | hspb1 |
| gene name | hspb1 |
| gene type | coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047621.1 |
| NCBI id | CM018567.1 |
| chromosome length | 18889892 |
| location | 6777992 ~ 6784388 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| symbol | description |
|---|---|
| hspb1 | Acts upstream of or within regulation of myofibril size; response to arsenic-containing substance; and response to heat. Located in cytoplasm and nucleus. Is expressed in several structures, including mesoderm; musculature system; nervous system; pericardial region; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease axonal type 2F; distal hereditary motor neuropathy type 2B; pancreatic cancer; and sarcoma. Orthologous to human HSPB1 (heat shock protein family B (small) member 1). |
| description |
|---|
| heat shock protein, alpha-crystallin-related, 1 |
| id | description |
|---|---|
| K04455 | HSPB1; heat shock protein beta-1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_026921457.2 | True | 1285 | mRNA | 0.48 | 3 | 6777992 | 6784388 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| srrm3 | srrm3 | coding | upstream | 4085 | 6691036 ~ 6773907 (+) |
| LOC113531024 | LOC108260100 | coding | upstream | 90016 | 6668932 ~ 6687976 (+) |
| c1qbp | c1qbp | coding | upstream | 115742 | 6658053 ~ 6662250 (+) |
| LOC113531298 | myo19,LOC107591502 | coding | upstream | 124090 | 6633970 ~ 6653902 (+) |
| tbx16l | LOC108260093 | coding | upstream | 232257 | 6537778 ~ 6545735 (+) |
| LOC113531112 | tspoap1 | coding | downstream | 47296 | 6831684 ~ 6931919 (+) |
| mtmr4 | mtmr4 | coding | downstream | 295719 | 7080107 ~ 7149766 (+) |
| ca4a | LOC108259876 | coding | downstream | 378911 | 7163299 ~ 7179897 (+) |
| gusb | gusb,LOC107591494 | coding | downstream | 440322 | 7224710 ~ 7238694 (+) |
| rplp0 | rplp0,LOC107654305 | coding | downstream | 491166 | 7275554 ~ 7279408 (+) |
| G382257 | NA | non-coding | upstream | 109607 | 6666639 ~ 6668385 (+) |
| G382207 | NA | non-coding | upstream | 197382 | 6579113 ~ 6580610 (+) |
| G382205 | NA | non-coding | upstream | 201810 | 6575979 ~ 6576182 (+) |
| G382148 | NA | non-coding | upstream | 227188 | 6549802 ~ 6550804 (+) |
| G382146 | NA | non-coding | upstream | 240761 | 6537031 ~ 6537231 (+) |
| G382274 | NA | non-coding | downstream | 22791 | 6807179 ~ 6809541 (+) |
| G382292 | NA | non-coding | downstream | 25965 | 6810353 ~ 6810567 (+) |
| LOC117596241 | NA | non-coding | downstream | 26730 | 6811118 ~ 6815375 (+) |
| G382351 | supt4h1,LOC107654296,LOC107563417 | non-coding | downstream | 167331 | 6951719 ~ 6954928 (+) |
| G382380 | NA | non-coding | downstream | 282425 | 7066813 ~ 7067761 (+) |
| ubb | ubb,LOC107567755,LOC107588961,LOC107387081 | other | upstream | 394307 | 6380662 ~ 6383685 (+) |
| G381893 | NA | other | upstream | 535295 | 6223168 ~ 6242697 (+) |
| G381835 | NA | other | upstream | 597079 | 6177804 ~ 6180913 (+) |
| zmp:0000001168 | sipa1,LOC108430456,LOC107742927 | other | upstream | 725636 | 5990022 ~ 6052356 (+) |
| G381829 | LOC108259779 | other | upstream | 801067 | 5975369 ~ 5976925 (+) |
| LOC113531592 | rnf43 | other | downstream | 177822 | 6962210 ~ 7058199 (+) |
| LOC113531088 | NA | other | downstream | 475865 | 7260253 ~ 7261090 (+) |
| dpm2 | dpm2,LOC107664400 | other | downstream | 753970 | 7538358 ~ 7544114 (+) |
| spns3 | LOC108260438,LOC108260072 | other | downstream | 1358195 | 8142583 ~ 8161257 (+) |
| G383217 | NA | other | downstream | 1398003 | 8182391 ~ 8213107 (+) |
