LOC113531012 (ns:zf-e68,myhz2,myhz1.1,myhz1.2,LOC108415768)


Basic Information

Item Value
gene id LOC113531012
gene name ns:zf-e68,myhz2,myhz1.1,myhz1.2,LOC108415768
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 10211942 ~ 10223032 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921463.2
AAGGAGACTGCAGAAGAGTCCAGGGAAATTCCTGTGTGTGGATTGTGAACTGACACCTGTGAGAGCACAGGAAGAAAGCTGCCACCATGAGCACAGACGCGGAGATGGCCGTTTATGGCAAAGCTGCCGTTTACCTCCGTAAGCCTGAGAAGGAGAGAATTGAGGCTCAAAACAAGCCCTTTGATGCAAAGGCGGCCTGCTATGTAGCTGATGACAAAGAGCTGTACCTTAAGGCTACAATCAAGAGCAGAGATGGTGGCAAAGTCACTGTCGAATTGCTTGAGAGCAAGGAGACAAGAACAGTTAAGGAGGATGATGTCTGCCCCATGAACCCTCCTAAGTTCGATAAGATTGAGGACATGGCTATGATGACCCACCTCAATGAAGCTTCTGTGCTGTATAACCTCAAAGAGCGTTACGCAGCATGGATGATCTACACCTACTCTGGACTTTTCTGTGCTACTGTGAACCCCTACAAGTGGCTCCCAGTGTACGATGCAGAAGTGGTGGCTGCCTACAGAGGCAAAAAGCGCATGGAAGCCCCACCTCACATCTTCTCTGTGTCTGACAATGCCTATCAGTTTATGCTCACTGATAGGGAGAACCAGTCTGTCCTGATTACTGGAGAATCTGGTGCTGGAAAGACTGTGAACACCAAACGTGTCATCCAGTACTTTGCCACAGTTGCTATGCAGAGTGACAAGAAGAAGGAGCAAGCTTCCAGCAAAATGCAGGGATCTCTTGAAGACCAGATCATTGCAGCCAATCCTCTCCTTGAGGCCTATGGTAATGCTAAGACTGTGAGAAATGACAACTCGTCTCGTTTTGGTAAATTTATCAGAATTCATTTTGGCACAAGCGGCAAACTGGCTAGTGCTGACATTGAGACATATCTGCTGGAGAAGTCTAGAGTATCTTTCCAGCTTTCAGACGAGAGAGGATACCACATCTTTTACCAGATGATGACCAATGAAAAGCCTGAGCTGATTGAAATGACGCTCATCTCCACCAACCCCTACGACTTCCCCATGTGCAGTCAGGGTCAGATCACAGTGCCAAGCATTAATGATAAGGAGGAACTGATTGCCACAGATACTGCTATCGACATCCTGGGCTTCAGTGCTGAGGAGAAAATGAGCATCTACAAATTTACTGGAGCTGTTCTTCATCACGGTAATATGAAGTTCAAGCAGAAGCAGCGTGAGGAGCAGGCTGAGCCTGATGGCACAGAGGAGGCTGACAAAGTGGCCTACCTTCTGGGTTTGAACTCAGCGGATATGCTGAAGGCCTTGTGCTACCCCAGAGTAAAGGTTGGAAACGAATTTGTGACAAAGGGTCAGACTGTGCCACAGGTATATAACGCAGTCAGCGCATTGGCCAAATCCATCTATGAAAGGATGTTCTTGTGGATGGTCATACGTATCAACCAGATGTTGGACACCAAACAAGCCAGACAGTTCTTCATCGGTGTGCTGGACATTGCTGGATTTGAAATCTTTGATTTCAACAGCATGGAGCAGCTGTGCATCAACTTCACCAATGAGAAACTGCAACAGTTCTTCAACCACCACATGTTTGTCCTGGAGCAAGAGGAGTACAAGAAGGAGGGCATTGTTTGGGAGTTCATTGACTTCGGCATGGACTTGGCTGCTTGCATTGAACTTATTGAGAAGCCCATGGGTATCTTCTCCATCCTTGAAGAAGAGTGCATGTTCCCCAAAGCTACAGACACCAGCTTCAAGAACAAGCTGTATGAACAGCATCTTGGCAAGTGCAACGCTTTCCAGAAACCCAGACCTGCCAAAGGCAAAGCTGAGGCCCACTTTTCCCTGGTTCACTATGCTGGTACTGTGGACTACAACATCTCTGGCTGGCTGGACAAGAACAAGGACCCACTGAATGAGTCTGTTGTGCAGCTCTACCAGAAGTCTTCCGTCAAACTGCTTTCTACCCTCTACCCACCTGTTGTTGAGgAGACCGGTGGCAAGAAGGGAGGCAAGAAGAAGGGTGGTTCCATGCAGACCGTGTCCTCACAGTTCAGGGAGAACTTGGGCAAGCTGATGACCAACTTGAGGAGCACTCATCCTCACTTTGTGCGTTGCCTGATTCCCAATGAGTCTAAGACTCCAGGTCTTATGGAGAACCACCTTGTTATCCACCAGCTGAGATGTAACGGTGTGCTGGAGGGTATCAGAATCTGCAGAAAGGGATTCCCCAGCAGAATCCTCTATGGTGACTTCAAGCAAAGaTACAAAGTGCTGAATGCCAGTGTTATTCCTGAGGGCCAGTTTATTGACAACAAGAAGGCCTGTGAGAAGCTTCTGGGATCCATTGACATTGACCATGACCAGTATAGATTTGGACACACTAAGGTGTTCTTCAAAGCTGGTCTGCTGGGTACTCTTGAAGAGATGCGAGATGAGAAACTGGCTGCTCTGGTCACAATGACTCAGGCTGTTTGCCGTGGTTTCCTCATGAGACGAGAGTTTGTGAAGATGATGGAGAGGAGGGAGGCCATTGACACCATCCAGTACAACATCCGCTCATTTATGAATGTCAAACATTGGCCATGGATGAAGGTGTACTACAAGATCAAGCCCCTGCTGAAGAGTGCTGAAACTGAGAAGGAGCTGGCCACCATGAAAGAGGACTTTGCAAAATGCAAGGAAGATCTCGCCAAGGCTGAGGCCAAAAAGAAGGAGCTGGAAGAAAAGATGGTGGCACTGCTCCAAGAGAAGAATGACCTGCAGCTTCAAGTTGCATCTGAAGCTGAGAATCTCTCAGATGCTGAGGAGAGATGTGAGGGTCTGATCAAAAGCAAAATCCAGCTTGAAGCTAAACTCAAAGAGACAACTGAGAGACTGGAAGATGAGGAGGAGATCAATGCTGAGCTGACTGCCAAGAAGAGGAAACTGGAAGATGAGTGCTCTGAGCTAAAGAAGGACATTGATGACTTGGAGCTCACCTTGGCTAAAGTGGAAAAGGAGAAACATGCCACTGAAAATAAGGTTAAGAACCTCACAGAGGAGATGACAGCTCAAGATGAGAGCATTGCCAAACTCACAAAAGAGAAGAAAGCCCTCCAAGAGGCACATCAGCAGACCCTTGATGATCTTCAGGCAGAGGAGGACAAAGTCAACACTCTGACAAAATCCAAGACTAAGCTTGAACAGCAAGTGGATGATcTGGAAGGTTCTCTTGAGCAAGAGAAGAAACTCCGTATGGATCTAGAGAGAGCCAAGAGAAAGCTTGAGGGTGACTTGAAACTGGCTCAGGAATCCATCATGGACCTGGAGAACGACAAGCAGCAGTCTGAAGAGAAGCTGAAAAAGAAAGAATTTGAAATAAGCCAGCTTCTTAGCAAGATTGAGGATGAGCAATCTCTTGGTGCTCAGCATCAGAAGAAGATCAAGGAGCTTCAGGCCCGTATTGAGGAGCTGGAGGAAGAGATTGAGGCTGAGCGTGCCGCTCGTGCCAAGGTTGAGAAGCAAAGATCTGATCTCTCCAGGGAACTTGAGGAGATCAGCGAGAGGCTTGAGGAGGCTGGTGGAGCAACTGCAGCTCAGATTGAGATGAACAAGAAGCGAGAGGCTGAGTTCCAGAAGCTGCGTCGTGATCTTGAAGAAGCCACATTGCAGCATGAAGCAACTGCTGCTGCCCTCCGCAAAAAGCAGGCTGACAGTGTGGCAGAGCTGGGAGAACAAATCGACAACCTGCAGCGAGTCAAGCAGAAACTTGAGAAGGAGAAGAGTGAATACAAAATGGAGATCGATGATCTCTCCAGCAATATGGAAGCTGTTGCTAAAGCTAAGGCAAATCTTGAAAAGATGTGCCGTACCCTTGAGGACCAACTGAGCGAGCTGAAGACCAAGAATGATGAGAATGCACGCCAGGTCAATGACATCAGTGTTCAAAAAGCCAGACTACAAACTGAAAATGGTGAGTTTTCACGTCAACTGGAAGAGAAGGAAGCTTTGATTTCTCAGCTGACCAGAGGCAAGCAGGCTTTCACTCAGCAAATTGAGGAGCTcaagagacagatggaggaggaggttaAGgcAAAGAATGCCCTGGCCCATGGTTTGCAGTCTGCCCGTCATGACTGTGATCTCCTCAGGGAGCAGTttgaggaggagcaggaggcaAAGGCTGAATTACAACGTGCAACGTCCAAGGCCAACAGCGAAGTGGCTCAGTggagaaataaatatgaaactgaTGCTATCCAGCGCACTGAGGAACTTGAGGAAGCCAAGAAGAAGTTGGCACAGCGTCTGCAGGAGGCTGAGGAACAAATTGAGGCTGTGAACTCCAAGTGTGCCTCTCTGGAAAAGACCAAGCAGAGACTGCAGGGTGAGGTGGAGGACCTCATGATTGATGTGGAAAGAGCCAATGCCTTGGCTGCTAACCTTGACAAGAAGCAGAGGAACTTTGATAAGGTCCTGGCAGAATGGAAGCAGAAGTATGAGGAAGGTCAGGCTGAGCTGGAGGGAGCCCAGAAGGAGGCTCGTGGTCTGAGCACTGAGCTGTTCAAGATGAAGAACTCCTATGAGGAAGCTCTTGATCAACTGGAAACACTCAAGAGGGAGAACAAGAATCTGCAGCAGGAGATCTCAGACCTGACTGAACAAATTGGTGATACTGGAAAGAGCATTCATGAGCTTGAGAAGGCCAAGAAGGCAGTAGAGACTGAGAAGGCTGAGATCCAGACTGCTCTGGAGGAGGCAGAGgGCACACTGGAGCATGAAGAGTCAAAGATTCTTCGTGTCCAGCTTGAACTTAACCAGGTTAAGAGTGAGATTGACAGGAAGCTTGCTGAGAAGGATGAGGAGATGGAACAAATCAAGAGGAACAGCCAGAGGGTGATTGAGTCTATGCAGAGTACTCTGGATTCTGAGGTCAGGAGCAGGAATGATGCTCTGAGAATTAAGAAGAAGATGGAGGGAGATCTCAATGAGATGGAAATTCAGCTCAGCCATGCCAATCGCCAAGCTGCTGAGGCACAGAAACAGCTGAGGAACGTCCAGGGACAACTCAAGGATGCTCAACTGCACCTTGATGATGCTTTGAGAGGACAAGAGGATATGAAGGAGCAAGTGGCCATGGTGGAGCGCAGAAACACTCTGATGTTGGCTGAAATTGATGAGCTCAGAGCTGCCCttgagcagacagagagaggccgCAAAGTGGCTGAACAGGAGCTGATTGATGCTAGTGAGCGTGTTGGTTTGCTGCACTCTCAGAACACAAGCCTGCTGAACACCAAGAAGAAGCTTGAGGGTGACCTTGCTCAAATCCAGAGTGAGGTTGAGGACACTGTGCAGGAAGCAAGAAATGCAGAGGAGAAGGCCAAGAAAGCTATCACTGATGCTGCAATGATGGCTGAAGAGTTGAAGAAGGAGCAGGACACTAGTGCTCATCTGGAGAGGATGAAGAAAAACCTGGAGGTCACAGTCAAGGACCTCCAGCACCGCCTGGATGAGGCTGAGAATCTGGCCATGAAGGGAGGAAAGAAACAACTTCAGAAACTGGAGTCCAGGGTACGTGAGCTGGAGTCTGAAGTTGAAGCTGAACAGAGACGTGGAGTTGACGCTGTTAAGGGTGTCCGCAAATATGAGAGGAGAGTGAAGGAGCTCACCTACCAAACTGAGGAGGACAAGAAGAACATTGCCAGGCTGCAAGATCTGGTTGATAAGCTGCAGCTGAAGGTCAAGGCCTATAAGAGACAGTCTGAGGAAGCGGAGGAACAGGCCAATTCCCACCTGTCCAAGCTCAGGAAGGTGCAGCATGATTTGGAGGAGGCTGAAGAGCGTGCTGACATCGCTGAGTCTCAGGTCAATAAGCTCAGGGCCAAGAGTCGTGATAGTGGAAAGGCCAAAGAAGAGTAAAACTCTGAAGCATGATTTTGCTGTGGTTATAAAATATGACTGTGTAGCAGAGCAAATTTTTCCattcaatgttaaataaaaatgtatacaatCAATCAA

Function

symbol description
myhz2 Predicted to enable ATP binding activity; actin filament binding activity; and cytoskeletal motor activity. Acts upstream of or within embryonic skeletal system development; response to activity; and skeletal muscle fiber development. Predicted to be part of myosin complex. Is expressed in fin; musculature system; pharyngeal arch; and trunk. Human ortholog(s) of this gene implicated in arthrogryposis multiplex congenita; disease of cellular proliferation; and distal arthrogryposis (multiple). Orthologous to several human genes including MYH1 (myosin heavy chain 1); MYH4 (myosin heavy chain 4); and MYH8 (myosin heavy chain 8).
myhz1.1 Predicted to enable ATP binding activity; actin filament binding activity; and cytoskeletal motor activity. Acts upstream of or within somite specification. Predicted to be part of myosin complex. Is expressed in several structures, including adaxial cell; brain; eye; musculature system; and somite. Human ortholog(s) of this gene implicated in arthrogryposis multiplex congenita; disease of cellular proliferation; and distal arthrogryposis (multiple). Orthologous to several human genes including MYH1 (myosin heavy chain 1) and MYH8 (myosin heavy chain 8).
myhz1.2 Predicted to enable ATP binding activity; actin filament binding activity; and cytoskeletal motor activity. Predicted to be part of myosin complex. Is expressed in cephalic musculature and trunk. Human ortholog(s) of this gene implicated in arthrogryposis multiplex congenita; disease of cellular proliferation; and distal arthrogryposis (multiple). Orthologous to several human genes including MYH1 (myosin heavy chain 1) and MYH8 (myosin heavy chain 8).

GO:

id name namespace
GO:0014823 response to activity biological_process
GO:0001757 somite specification biological_process
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K24220 MYH1s; myosin heavy chain 1/2/3/4/8/13/7B/15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921463.2 True 5987 mRNA 0.48 41 10211942 10223032

Neighbor

gene id symbol gene type direction distance location
hspb15 NA coding upstream 25781 10184088 ~ 10186161 (+)
dab2 dab2,LOC108260308,LOC107723357,LOC107691042,LOC107597220 coding upstream 28621 10170121 ~ 10183321 (+)
gas1b LOC108260269 coding upstream 76299 10132278 ~ 10135643 (+)
fbxw2 fbxw2,LOC107723354 coding upstream 98787 10102353 ~ 10113155 (+)
ncs1a ncs1,ncs1a,ncs1b,LOC107693863 coding upstream 117135 10053793 ~ 10094807 (+)
tescb tesc,tescb,LOC108441567,LOC107660769,LOC107723336,LOC107681843,LOC107740949 coding downstream 29555 10252587 ~ 10261745 (+)
taok3b LOC108270643,LOC107598017,LOC107723325,LOC107587450,LOC107740964,LOC107681865,LOC108441565 coding downstream 49618 10272650 ~ 10284551 (+)
cabp7b cabp7,cabp7b,LOC108270594,LOC107587385,LOC107681866 coding downstream 97032 10320064 ~ 10341504 (+)
arpc5lb arpc5l,arpc5la,LOC107753090,LOC107571143 coding downstream 144225 10367257 ~ 10378138 (+)
ppp1cc ppp1cc,LOC108259981,LOC105902522,LOC107567955 coding downstream 562525 10785557 ~ 10825976 (+)
G384466 NA non-coding upstream 82411 10129243 ~ 10129531 (+)
G384461 NA non-coding upstream 83971 10127771 ~ 10127971 (+)
G384459 LOC103376870 non-coding upstream 89056 10122533 ~ 10122886 (+)
G384212 NA non-coding upstream 376030 9835704 ~ 9835912 (+)
G384197 NA non-coding upstream 398251 9813485 ~ 9813691 (+)
G384583 NA non-coding downstream 83642 10306674 ~ 10306908 (+)
G384606 NA non-coding downstream 134627 10357659 ~ 10358263 (+)
G384607 NA non-coding downstream 135238 10358270 ~ 10358498 (+)
G384608 NA non-coding downstream 138223 10361255 ~ 10361490 (+)
G384592 NA non-coding downstream 157538 10380570 ~ 10388271 (+)
G384178 ier5l,LOC108228905 other upstream 443906 9765740 ~ 9768036 (+)
G383625 LOC108260351 other upstream 1436808 8764902 ~ 8775134 (+)
gig2o LOC108260416 other upstream 1619561 8590310 ~ 8592381 (+)
atf5a LOC108260316,LOC108429764,LOC107587340 other upstream 1646685 8558826 ~ 8565257 (+)
G383217 NA other upstream 1998835 8182391 ~ 8213107 (+)
G384593 NA other downstream 155181 10378213 ~ 10379665 (+)
ajm1 c28h9orf172 other downstream 1074942 11297974 ~ 11326055 (+)
fcho2 fcho2,LOC107700925,LOC107655928 other downstream 1494986 11718018 ~ 11835044 (+)
zgc:63972 LOC108260458 other downstream 2567869 12790901 ~ 12800917 (+)
G386294 NA other downstream 3598756 13821788 ~ 13824055 (+)

Expression


Co-expression Network