LOC113531024 (LOC108260100)


Basic Information

Item Value
gene id LOC113531024
gene name LOC108260100
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 6668932 ~ 6687976 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921478.2
ACCGTGCCTTCCATGTCCAAAAGCTTCACGAGGCTCCTCCGGCCAACTTTTGTGACCTTTGACTCGGAGACACGACATGCGATCTGGCGTTAGAGCGCGCGCGAGGCGTGGCCCTGGCCGCAGACCCGTCACTTCCAACGGCACCGAACTCCTAATGGCTGTTTGAGGAATTAAATAACCGATTGTGTAAGAGACAATACAAAAGAGAGGATGGCAAAGCTGGAGACGTTTTCCAAGCCCCCGAAGGAGACCCAGATCGTTGATTCGGAGTCAGATTCGGAGCAGGATGACGGTTTGACTCACGCGGAATCTGCCGGTTCCGGCACGAGCGCGGAGACGGTTCGGCGCGCGCAGGTGATCCACAGCGGACACTTCATGGTTTCCTCACCGCACAGTGATCCAGTACCGCGCAGAAGCAGAAGTTATTACGACTTCGACACGGTGAACAAGCCGCGCTTACAGACCTACAGCTTCGGGCCGTTCAGCTCCGGCAGACTGAGCATCGACCCAACACTCACGCGCCTGTTCGAGTGCATGACACTGGCCTATAGcgGGAAGATCGTGTCTCCTAAATGGAAATCCTTTAAAGGTCTGAGGCTGCTGTGGAGGGATAAAATCCGTCTGAATAATGGCATCTGGAGAGCCTGGTTCATTCAGTAtgtggagaaaaggaaaaatccagTGTGTGGGTTCGTCACTCCTTTGGAGGGGTCCGAGGCAGACGCCCATCGCAAACCTGAGGCAATTGTGCTGGAGGGCAGCTACTGGAAGAGACGGATAGAAGTGGTGATAAAAGAGTATCACAAATGGAGGATTTACTACAAGAAGAGGAAACACAAAGATCATGTGCCTGTTCTTCAGACGACGACCATCTGCAGGTCTGGCCTGGAGAAATGGTCCGATCAGATGTACTCAGAGCCAGAACCTTCTCAGGAGGAGATGTTTGACTTGGACTGCTTTCTATCAGATATCTCAGACACTCTCTTCACCATGACCCAGAAGCCAAACCCTTGGAGTGAGGAACGCCACAACACCTACACCAGCAATGCTGATATGATCCAGCCTGGTTTGACTCCACTTCAGCCCAGCTTGGACGATCTCATGGACATTCCTGACATCTTTGCAAGTTACCGTGGCCATCCTCTGGTACAGAGTGGTTATGCTGACTATGATTTATTCGAGAGTCCATCCAACGCACTTTTTCCCTCAACCCCATccactatgattaatacacccCTGATACACACAGGATCCCAAATTTCACAGCCCAATATGACAGTCGAGAGCTTGCCGCAATCCTCAGCAGACAGCATACCCTGCCTTGGCTATCCACGCCAACATCTGACCCCTGAGATGCCCTTAGATACCAGCAGAATGACCTCCAACCCCAAGTTCAAGAGTCATTTAGAGTACAGCGAGTTCCATCACTCCCCAGCCATCCTCCCTGGCATGGACTCATACGGACAGTCCTACAGTGTTCCTAGCATTGCCACTGGACCTGCAAACATTTCCTCTGCCTCTATGTCTCAGGAGAACCCTTACATCTACCCAAGCACCTGCCTGAAATACAGACACGCTTCAGGCAGCCAATCGGGGGGCAACGAAGTAACCACACCCACTGTCATCACACATACAGGATCCATGAATGTCATAACACAAGATCACCAAGACGGCCAAAGCTACGCTATGCTAAACATGCTGGACTACCAGCAGACGTCCGTAGCTCCGCCTATGCCCAGCCAAGCCCACTGCTTCTCCATGCCACAGCAGGTAGCCGTGGGCTCGGGCAGAGGAAAGCACAAGCAAAAAATGGGAGGAGGTAAAAGGTTTCCCATGGCGACGGCTGTGCCTGTTTCTGTGGCTCCACCCACACAGACTAGTTGCCTGGCCAAGCTCTTGTCCTCCAGCCCTCAAGAACGAAAACCGACAGTGGGTTTTGACCCTCCCTTTGTTGGGCTGAAATCTCATAGAACTTCTCCCATCTTAGCATCCACCAGCAGCATGCCAGTGGACCAAAGAGGTTCACAGGTATCCCAGCATCCCCCTTGGCCCCCTGCCGAAGTGTCACTGCAGTGCCAGATGCCCATGATGGTACATTCCAATGtctctcacagctccagcatcTCATCCCTCCTTGTCCCCAAAACTGAGAAACTCTCACCTGTCCAAATCCACGTACCAGAAAGGACAAGTCTAACAGTAAGTTTTTCAGGAAACTTCGGCCCAACATCCCCAACGATCCTGCCAGAGAAAACGTCTGATTCATCACACACTTTATCTGGAATAACCAAGACAGAGCCCAATAGGACGGACACAAGGCGAATCACACACATATCCGCCGAGCAGAAGAGGAGGTTTAACATCAAACTGGGTTTTGACACTTTACACAGTCTGGTGACAACACTTAGCTCTCAGCCCAGCATTAagATCAGTAAGGCCACTACGCTACAGAAGACAGCTGAGTACATCAGTAAGATGCAGCAGGAGAGAACACAGCTCCATGAAGAGGCACAGAGGCTCCGAGATGAGATTCTAGCTCTCAACTCTGCCATCAAtgtgtgtcagCAGCAGCTTCCTGCCACCGGCGTCCCCATCACCCGCCAGCGCTTCGATCACATGAGGGAAAGGTTTCGAGAATACGTCCAGGCCCAGACCCTCCAGAATTGGAAATTCTGGATCTTCAGTGTGATCATGGAGCCTCTGTTTGAGTCCTATAACGTCATGGTGTCTACAGCCAGTGTGGAGGAGATGTGCCGCACCACGCTCGGTTGGCTGGACCAACACTGCTCCCTACCTGCCCTCAGACCCACTGTTCTGAGTTCACTCCGCTTGCTCAGCACCACCACATCCATCTTGACAGATCCAAGTCTGGTTCCTGAGCAGGCCACTCAGGCAGTCACTCAGAGACAGCTGTCCCACAGCTGCAACCAATGACCAAAGTgttttctctctcgctctccctctctctctctctctgtctctctctctcacaaacatgTCTGCAGCCAATCATGTCCCTGACAAAGCTACAACCAATGATAGAACTAATAACATCAACCTATGGCTACAAACAATGattattaaaattcattattagaagatacacaaaacaacatatATAATGCCTCCAGCATGCACATACAGCCTCAATATACATATACgctcactggtcactttattaggaacacctgtacacctgtttgttcatgcaattatccaatcagccaatcatgtggcagcggtgcaatgcataaaatcatgcagatacaagtcaagagcttcaggtactTTATGAAACAGCAGATTGGGGGAACAGAAACACATGAAACACCAGATTGGGGGaacatgtgatctcagtgaccgtGGCATGTTGCTGATGCCAAACAGTCTGgattgaatatttcagaaattcctgattttttgggatttttttttttttttttacacataa

Function

GO: NA

KEGG:

id description
K09113 MLX; MAX-like protein X

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921478.2 True 3451 mRNA 0.50 17 6668932 6687976

Neighbor

gene id symbol gene type direction distance location
c1qbp c1qbp coding upstream 6682 6658053 ~ 6662250 (+)
LOC113531298 myo19,LOC107591502 coding upstream 15030 6633970 ~ 6653902 (+)
tbx16l LOC108260093 coding upstream 123197 6537778 ~ 6545735 (+)
eral1 eral1 coding upstream 136038 6522164 ~ 6532894 (+)
LOC113531597 LOC108260041 coding upstream 217499 6436800 ~ 6451433 (+)
srrm3 srrm3 coding downstream 3060 6691036 ~ 6773907 (+)
hspb1 hspb1 coding downstream 90016 6777992 ~ 6784388 (+)
LOC113531112 tspoap1 coding downstream 143708 6831684 ~ 6931919 (+)
mtmr4 mtmr4 coding downstream 392131 7080107 ~ 7149766 (+)
ca4a LOC108259876 coding downstream 475323 7163299 ~ 7179897 (+)
G382257 NA non-coding upstream 547 6666639 ~ 6668385 (+)
G382207 NA non-coding upstream 88322 6579113 ~ 6580610 (+)
G382205 NA non-coding upstream 92750 6575979 ~ 6576182 (+)
G382148 NA non-coding upstream 118128 6549802 ~ 6550804 (+)
G382146 NA non-coding upstream 131701 6537031 ~ 6537231 (+)
G382274 NA non-coding downstream 119203 6807179 ~ 6809541 (+)
G382292 NA non-coding downstream 122377 6810353 ~ 6810567 (+)
LOC117596241 NA non-coding downstream 123142 6811118 ~ 6815375 (+)
G382351 supt4h1,LOC107654296,LOC107563417 non-coding downstream 263743 6951719 ~ 6954928 (+)
G382380 NA non-coding downstream 378837 7066813 ~ 7067761 (+)
ubb ubb,LOC107567755,LOC107588961,LOC107387081 other upstream 285247 6380662 ~ 6383685 (+)
G381893 NA other upstream 426235 6223168 ~ 6242697 (+)
G381835 NA other upstream 488019 6177804 ~ 6180913 (+)
zmp:0000001168 sipa1,LOC108430456,LOC107742927 other upstream 616576 5990022 ~ 6052356 (+)
G381829 LOC108259779 other upstream 692007 5975369 ~ 5976925 (+)
LOC113531592 rnf43 other downstream 274234 6962210 ~ 7058199 (+)
LOC113531088 NA other downstream 572277 7260253 ~ 7261090 (+)
dpm2 dpm2,LOC107664400 other downstream 850382 7538358 ~ 7544114 (+)
spns3 LOC108260438,LOC108260072 other downstream 1454607 8142583 ~ 8161257 (+)
G383217 NA other downstream 1494415 8182391 ~ 8213107 (+)

Expression


Co-expression Network